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The map label for this gene is ybiA [H]

Identifier: 17232521

GI number: 17232521

Start: 6001201

End: 6001674

Strand: Reverse

Name: ybiA [H]

Synonym: all5029

Alternate gene names: 17232521

Gene position: 6001674-6001201 (Counterclockwise)

Preceding gene: 17232525

Following gene: 17232518

Centisome position: 93.57

GC content: 38.82

Gene sequence:

>474_bases
ATGACTATTTACTTTTATAAGGTTTGGCAGCCTTATGGCTGTTTTTCTAACTTTTCCCCCCATAGCATTGAAATTCAGGG
GACTTACTGGTTAACAGTGGAACATTATTATCAAGCGCAAAAGTTTGTTGGTAGTGTAGATGCGGCGATTATACCCGCTA
TCCGTGCGAGCAAAACGCCAGAAGAAGCTGCTGCTTTAGGACGATGTACCAGTCGTCAACTTCGCCAAGATTGGGATTTA
GTCAAAACTATAGTTATGCGAGAAGCTGTACTGAAAAAATTTCTGACTCATACTGATATTAGAGAAATTCTCTTAAGTAC
AGGTAATGAGATTTTAGTAGAAGATTCCTCTTGTGACTATTTTTGGGGCTGTGGAGCAGATAAAACTGGACAAAATCATC
TCGGAAAAATTCTCATGAGTGTGCGTGAAGAAATACGTAAGCTACAAATACTTTCTGTAGTTTATCAGGAATAG

Upstream 100 bases:

>100_bases
AAATAATAGCTTTCAATCCCAAGCCGCTCACTTCTTGCCAGCATCTACAGGCATTATAGAAATAGAGATTTATATATCTA
TAAAAAAGAGCAATTTTTCA

Downstream 100 bases:

>100_bases
AAATGAGGCACTATAGCGTTTCCTCATCAGTCATAGATACCAGACTGTTTAAAAAGTCTGGTATCTGAACACCAGAAGCC
TTTCAAACCTCATACTTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MTIYFYKVWQPYGCFSNFSPHSIEIQGTYWLTVEHYYQAQKFVGSVDAAIIPAIRASKTPEEAAALGRCTSRQLRQDWDL
VKTIVMREAVLKKFLTHTDIREILLSTGNEILVEDSSCDYFWGCGADKTGQNHLGKILMSVREEIRKLQILSVVYQE

Sequences:

>Translated_157_residues
MTIYFYKVWQPYGCFSNFSPHSIEIQGTYWLTVEHYYQAQKFVGSVDAAIIPAIRASKTPEEAAALGRCTSRQLRQDWDL
VKTIVMREAVLKKFLTHTDIREILLSTGNEILVEDSSCDYFWGCGADKTGQNHLGKILMSVREEIRKLQILSVVYQE
>Mature_156_residues
TIYFYKVWQPYGCFSNFSPHSIEIQGTYWLTVEHYYQAQKFVGSVDAAIIPAIRASKTPEEAAALGRCTSRQLRQDWDLV
KTIVMREAVLKKFLTHTDIREILLSTGNEILVEDSSCDYFWGCGADKTGQNHLGKILMSVREEIRKLQILSVVYQE

Specific function: Required for swarming motility [H]

COG id: COG3236

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ybiA family [H]

Homologues:

Organism=Escherichia coli, GI1787017, Length=143, Percent_Identity=42.6573426573427, Blast_Score=120, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012816 [H]

Pfam domain/function: PF08719 DUF1768 [H]

EC number: NA

Molecular weight: Translated: 18045; Mature: 17914

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIYFYKVWQPYGCFSNFSPHSIEIQGTYWLTVEHYYQAQKFVGSVDAAIIPAIRASKTP
CEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCH
EEAAALGRCTSRQLRQDWDLVKTIVMREAVLKKFLTHTDIREILLSTGNEILVEDSSCDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCE
FWGCGADKTGQNHLGKILMSVREEIRKLQILSVVYQE
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TIYFYKVWQPYGCFSNFSPHSIEIQGTYWLTVEHYYQAQKFVGSVDAAIIPAIRASKTP
EEEEEEECCCCCCCCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCH
EEAAALGRCTSRQLRQDWDLVKTIVMREAVLKKFLTHTDIREILLSTGNEILVEDSSCDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCE
FWGCGADKTGQNHLGKILMSVREEIRKLQILSVVYQE
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]