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The map label for this gene is yrvJ [H]

Identifier: 17232491

GI number: 17232491

Start: 5970525

End: 5972318

Strand: Reverse

Name: yrvJ [H]

Synonym: all4999

Alternate gene names: 17232491

Gene position: 5972318-5970525 (Counterclockwise)

Preceding gene: 17232494

Following gene: 17232490

Centisome position: 93.12

GC content: 45.71

Gene sequence:

>1794_bases
GTGCCACAGTCACATAGTGAATACTTCTGTGATACTGCTGTGAAAAAAGTTCTCATCCCAGTAATATTAAGCTTCGTTGT
CACCTCCTCCGTTGCTTTGGCTTCCTCACCTCTCAAAGTTGTTTATCCGCCGACAAACCACCAGACTAGTGCAGAAAAAA
TCTTTTTTATTGGTACAGCACCACCAAACGGCCAAGTTCTCGTTAATGGTAAGCCAATTAATCGCAGCCGGTCTGGCCAT
TTTGCCCCAAGTTTTCCCTTACAGTTAGGAGAGAATATCTTTACAATACGCCACCAAAATCAAGAGCTTCAGATTAAGGT
GACAAGGCTGAGTAATCAACCAGAGCTACCACAAGGTTTAGCTTTTGCTAAAGGTTCTCTCACACCAACTGCCGACATTG
CCAGACTACCTGGAGAACTCATTTGTTTTAGCGCTATTGCACCTCCTAACGCCAGTGTCTCTGTGAAACTGGCTAATGAT
ACTGTGGTACTTTTGCCTCAACCACAACAAGCAATACTACCAAGTAATTTGGCTGCGCTCACTGGACAAAATCAACCCAC
TACCCAGTCTATCCCAGGTAAGTATGAGGGTTGCACAACAGTACCAGTTGCAACAGATTTGGGACAACCTCAATACCAAC
TGACACTTAATGGTAAGACGATAACTCAACCAGGTGCTGGCAAAATTAAAATTCTCTCACCCACGCAGTTACCTGTAGCT
GAGGTGGTAGCAGACGCAGGAGTTGCCCGGACTGGCCCTAGTACCGATTTTTCTCGACTTACGCCACTGCCTAAGGGAAC
ACGAGCCACTGTCACAGGTAAAGAAGGTGTATGGTTTCGCCTAGACTATGGTGCTTGGATTAATAGTCAGGAAACCCGCA
TTCTTCCAGGAAGTGTTCCGCCACAAACAGTTATACGTAGTGTTGGATATCGAAGACTTCCAGGTACAACAGAAATGCTT
TTCCCTCTCCAAACCCCTGTACCTGTGAGTGTGCAGCAAGGAGAAAAAACTTTCACCCTGACACTCCACAACACCACTGC
CCAAACAGATATTATTCGCCTTGATGATGACCCTTTAATTTCTCGTCTAGATTGGCAGCAGATAGCTTCAGGAGAGGTAA
AATATACCTTTAACCTGAAAAAAGCTCAACAGTGGGGATATAAGCTGAGATACGACGGTACAACCCTGGTGTTAGCTTTA
CGCCATGCGCCTGTTATCAGGCAGAATAGGCAAAAGCCCTTATCTGGTATCAAGATTCTACTCGATCCTGGTCATGGTGG
TAAAGAATCTGGCGCAACTGGGCCGACTGGATATTTAGAAAAGGACGTAAATCTGGCAGTATCGAAGTTATTGCGTGATG
AATTGCTCAAATTAGGGGCAAATGTGGTGATGACTAGGAATGATGATCGGGATGTCTCCCTACCAGAGCGTCAAGCAATT
ATCAATCGAGAAGAACCAGCGATCGCTCTTTCCGTCCATTACAACGCTCTCCCCGATGCTGGCGATGCGGAAAACACTAA
GGGGATTGGTATGTTTTGGTACCATCCCCAAGCCCATAACCTCGCCGTGTTCATGCACAATTATCTCGTGAATAAACTCC
GTAGACCTTCCTACGGTGTGTTTTGGAATAACTTAGCCCTCACACGCCCAGCCGCCGCACCCTCGTTATTATTAGAGTTA
GGTTTTATGAGCAATCCCCATGAATTTGAATGGGTGACAAATCCCCAAGAGCAGAAAAAGTTAGCTAAAGTTTTGGCTGA
AGGGATAACTGAGTGGTTTCGTAGTGGGAAATAG

Upstream 100 bases:

>100_bases
TACTGGAAACAACACCTCCAGTAACAAAGATAAACTTAGTCATAGTAGTTTGAATTTTTATCAACTGCTAACGATACCTT
CCAAAATCCATCCCGTCATT

Downstream 100 bases:

>100_bases
CATATTTTTGAAGTGAAATTCACACCATTACTGATAGGATTCATAGTTTTAAATTCTCTGGCGACTTCCAGCGTCACTTG
GGCGCAAGACAAAAACCCGA

Product: N-acetylmuramoyl-L-alanine amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 597; Mature: 596

Protein sequence:

>597_residues
MPQSHSEYFCDTAVKKVLIPVILSFVVTSSVALASSPLKVVYPPTNHQTSAEKIFFIGTAPPNGQVLVNGKPINRSRSGH
FAPSFPLQLGENIFTIRHQNQELQIKVTRLSNQPELPQGLAFAKGSLTPTADIARLPGELICFSAIAPPNASVSVKLAND
TVVLLPQPQQAILPSNLAALTGQNQPTTQSIPGKYEGCTTVPVATDLGQPQYQLTLNGKTITQPGAGKIKILSPTQLPVA
EVVADAGVARTGPSTDFSRLTPLPKGTRATVTGKEGVWFRLDYGAWINSQETRILPGSVPPQTVIRSVGYRRLPGTTEML
FPLQTPVPVSVQQGEKTFTLTLHNTTAQTDIIRLDDDPLISRLDWQQIASGEVKYTFNLKKAQQWGYKLRYDGTTLVLAL
RHAPVIRQNRQKPLSGIKILLDPGHGGKESGATGPTGYLEKDVNLAVSKLLRDELLKLGANVVMTRNDDRDVSLPERQAI
INREEPAIALSVHYNALPDAGDAENTKGIGMFWYHPQAHNLAVFMHNYLVNKLRRPSYGVFWNNLALTRPAAAPSLLLEL
GFMSNPHEFEWVTNPQEQKKLAKVLAEGITEWFRSGK

Sequences:

>Translated_597_residues
MPQSHSEYFCDTAVKKVLIPVILSFVVTSSVALASSPLKVVYPPTNHQTSAEKIFFIGTAPPNGQVLVNGKPINRSRSGH
FAPSFPLQLGENIFTIRHQNQELQIKVTRLSNQPELPQGLAFAKGSLTPTADIARLPGELICFSAIAPPNASVSVKLAND
TVVLLPQPQQAILPSNLAALTGQNQPTTQSIPGKYEGCTTVPVATDLGQPQYQLTLNGKTITQPGAGKIKILSPTQLPVA
EVVADAGVARTGPSTDFSRLTPLPKGTRATVTGKEGVWFRLDYGAWINSQETRILPGSVPPQTVIRSVGYRRLPGTTEML
FPLQTPVPVSVQQGEKTFTLTLHNTTAQTDIIRLDDDPLISRLDWQQIASGEVKYTFNLKKAQQWGYKLRYDGTTLVLAL
RHAPVIRQNRQKPLSGIKILLDPGHGGKESGATGPTGYLEKDVNLAVSKLLRDELLKLGANVVMTRNDDRDVSLPERQAI
INREEPAIALSVHYNALPDAGDAENTKGIGMFWYHPQAHNLAVFMHNYLVNKLRRPSYGVFWNNLALTRPAAAPSLLLEL
GFMSNPHEFEWVTNPQEQKKLAKVLAEGITEWFRSGK
>Mature_596_residues
PQSHSEYFCDTAVKKVLIPVILSFVVTSSVALASSPLKVVYPPTNHQTSAEKIFFIGTAPPNGQVLVNGKPINRSRSGHF
APSFPLQLGENIFTIRHQNQELQIKVTRLSNQPELPQGLAFAKGSLTPTADIARLPGELICFSAIAPPNASVSVKLANDT
VVLLPQPQQAILPSNLAALTGQNQPTTQSIPGKYEGCTTVPVATDLGQPQYQLTLNGKTITQPGAGKIKILSPTQLPVAE
VVADAGVARTGPSTDFSRLTPLPKGTRATVTGKEGVWFRLDYGAWINSQETRILPGSVPPQTVIRSVGYRRLPGTTEMLF
PLQTPVPVSVQQGEKTFTLTLHNTTAQTDIIRLDDDPLISRLDWQQIASGEVKYTFNLKKAQQWGYKLRYDGTTLVLALR
HAPVIRQNRQKPLSGIKILLDPGHGGKESGATGPTGYLEKDVNLAVSKLLRDELLKLGANVVMTRNDDRDVSLPERQAII
NREEPAIALSVHYNALPDAGDAENTKGIGMFWYHPQAHNLAVFMHNYLVNKLRRPSYGVFWNNLALTRPAAAPSLLLELG
FMSNPHEFEWVTNPQEQKKLAKVLAEGITEWFRSGK

Specific function: Probably involved in cell-wall metabolism [H]

COG id: COG0860

COG function: function code M; N-acetylmuramoyl-L-alanine amidase

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002508
- InterPro:   IPR017293
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01520 Amidase_3; PF08239 SH3_3 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 65297; Mature: 65165

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQSHSEYFCDTAVKKVLIPVILSFVVTSSVALASSPLKVVYPPTNHQTSAEKIFFIGTA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEECC
PPNGQVLVNGKPINRSRSGHFAPSFPLQLGENIFTIRHQNQELQIKVTRLSNQPELPQGL
CCCCEEEECCCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCEEEEEEEEECCCCCCCCCC
AFAKGSLTPTADIARLPGELICFSAIAPPNASVSVKLANDTVVLLPQPQQAILPSNLAAL
EECCCCCCCCHHHHHCCCCEEEEEECCCCCCCEEEEEECCEEEEECCCCHHHCCCCHHHH
TGQNQPTTQSIPGKYEGCTTVPVATDLGQPQYQLTLNGKTITQPGAGKIKILSPTQLPVA
CCCCCCCCCCCCCCCCCEEECEEECCCCCCEEEEEECCEEEECCCCCEEEEECCCCCCHH
EVVADAGVARTGPSTDFSRLTPLPKGTRATVTGKEGVWFRLDYGAWINSQETRILPGSVP
HHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCEEEEEECCCEECCCCCEEECCCCC
PQTVIRSVGYRRLPGTTEMLFPLQTPVPVSVQQGEKTFTLTLHNTTAQTDIIRLDDDPLI
HHHHHHHCCCEECCCCCEEEEECCCCCCCEEECCCEEEEEEEECCCCCEEEEEECCCHHH
SRLDWQQIASGEVKYTFNLKKAQQWGYKLRYDGTTLVLALRHAPVIRQNRQKPLSGIKIL
HHCCHHHHCCCCEEEEEEEHHHHHCCEEEEECCCEEEEEECCCCHHHHCCCCCCCCEEEE
LDPGHGGKESGATGPTGYLEKDVNLAVSKLLRDELLKLGANVVMTRNDDRDVSLPERQAI
EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHH
INREEPAIALSVHYNALPDAGDAENTKGIGMFWYHPQAHNLAVFMHNYLVNKLRRPSYGV
CCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHCCCCCCE
FWNNLALTRPAAAPSLLLELGFMSNPHEFEWVTNPQEQKKLAKVLAEGITEWFRSGK
EECCEEEECCCCCHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PQSHSEYFCDTAVKKVLIPVILSFVVTSSVALASSPLKVVYPPTNHQTSAEKIFFIGTA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEECC
PPNGQVLVNGKPINRSRSGHFAPSFPLQLGENIFTIRHQNQELQIKVTRLSNQPELPQGL
CCCCEEEECCCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCEEEEEEEEECCCCCCCCCC
AFAKGSLTPTADIARLPGELICFSAIAPPNASVSVKLANDTVVLLPQPQQAILPSNLAAL
EECCCCCCCCHHHHHCCCCEEEEEECCCCCCCEEEEEECCEEEEECCCCHHHCCCCHHHH
TGQNQPTTQSIPGKYEGCTTVPVATDLGQPQYQLTLNGKTITQPGAGKIKILSPTQLPVA
CCCCCCCCCCCCCCCCCEEECEEECCCCCCEEEEEECCEEEECCCCCEEEEECCCCCCHH
EVVADAGVARTGPSTDFSRLTPLPKGTRATVTGKEGVWFRLDYGAWINSQETRILPGSVP
HHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCEEEEEECCCEECCCCCEEECCCCC
PQTVIRSVGYRRLPGTTEMLFPLQTPVPVSVQQGEKTFTLTLHNTTAQTDIIRLDDDPLI
HHHHHHHCCCEECCCCCEEEEECCCCCCCEEECCCEEEEEEEECCCCCEEEEEECCCHHH
SRLDWQQIASGEVKYTFNLKKAQQWGYKLRYDGTTLVLALRHAPVIRQNRQKPLSGIKIL
HHCCHHHHCCCCEEEEEEEHHHHHCCEEEEECCCEEEEEECCCCHHHHCCCCCCCCEEEE
LDPGHGGKESGATGPTGYLEKDVNLAVSKLLRDELLKLGANVVMTRNDDRDVSLPERQAI
EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHH
INREEPAIALSVHYNALPDAGDAENTKGIGMFWYHPQAHNLAVFMHNYLVNKLRRPSYGV
CCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHCCCCCCE
FWNNLALTRPAAAPSLLLELGFMSNPHEFEWVTNPQEQKKLAKVLAEGITEWFRSGK
EECCEEEECCCCCHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]