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The map label for this gene is yrvJ [H]

Identifier: 17232490

GI number: 17232490

Start: 5969829

End: 5970512

Strand: Reverse

Name: yrvJ [H]

Synonym: all4998

Alternate gene names: 17232490

Gene position: 5970512-5969829 (Counterclockwise)

Preceding gene: 17232491

Following gene: 17232486

Centisome position: 93.09

GC content: 43.42

Gene sequence:

>684_bases
GTGAAATTCACACCATTACTGATAGGATTCATAGTTTTAAATTCTCTGGCGACTTCCAGCGTCACTTGGGCGCAAGACAA
AAACCCGAATCGGGCTAACTCATCTGTAATTTCCCACAGACGACACAAGCCTTTATCTGGATTGAAAATTGTCCTGAACG
CTGGACATGGTGGCACAGAATTGGGTGCAGCTGGCGCAACTGGTTATTTAGCAAAAGACTTGAATTTGCAAGTCACAAAG
TTATTGCAGGATGAGCTAGTGCAGCTAGGTGCAGATGTAGTGATGATTAGGGAAGATGATAGAGACATATCCCTCGCAGA
ACGTCAGAAAATTATAGAGCAAGAATCACCTGCGATCGCTCTTACATTTCACTATCGCTCCCTCCCAGATGATGGCGATG
CGGAAAATACCAGAGGTGTAAGTAGCTATTGGTATCATCCTCAAGCCCATAGCTTGGCTACTTTACTACACAACCGCTTA
GTTGATGATTTGGGTAGACCTTCTTATGGTTTGTATTGGCAAAATTTAGCACTCACACGTCCCCATTCTTCACCATCAGT
ATTATTAGAGTTAGGTTTTATGAGTAACCCTGACGACTTTGAGGAGGCGATAAATCCCCAGGAACAGAAGAAGTTAGCTA
AAGTTTTGGCTGAGGGTATTACTGAGTGGTTTAGAAGCCTGTAA

Upstream 100 bases:

>100_bases
TGAATGGGTGACAAATCCCCAAGAGCAGAAAAAGTTAGCTAAAGTTTTGGCTGAAGGGATAACTGAGTGGTTTCGTAGTG
GGAAATAGCATATTTTTGAA

Downstream 100 bases:

>100_bases
TAGTTGCGACTGAAATGACAAATCAAGAGGGAAGCGACAGAGGTTTTATTCTTCCCTACTCTCTTGAGTTGGCTGAGTTT
GTGCTTGCTGCACCTGCTCA

Product: N-acetylmuramoyl-L-alanine amidase-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MKFTPLLIGFIVLNSLATSSVTWAQDKNPNRANSSVISHRRHKPLSGLKIVLNAGHGGTELGAAGATGYLAKDLNLQVTK
LLQDELVQLGADVVMIREDDRDISLAERQKIIEQESPAIALTFHYRSLPDDGDAENTRGVSSYWYHPQAHSLATLLHNRL
VDDLGRPSYGLYWQNLALTRPHSSPSVLLELGFMSNPDDFEEAINPQEQKKLAKVLAEGITEWFRSL

Sequences:

>Translated_227_residues
MKFTPLLIGFIVLNSLATSSVTWAQDKNPNRANSSVISHRRHKPLSGLKIVLNAGHGGTELGAAGATGYLAKDLNLQVTK
LLQDELVQLGADVVMIREDDRDISLAERQKIIEQESPAIALTFHYRSLPDDGDAENTRGVSSYWYHPQAHSLATLLHNRL
VDDLGRPSYGLYWQNLALTRPHSSPSVLLELGFMSNPDDFEEAINPQEQKKLAKVLAEGITEWFRSL
>Mature_227_residues
MKFTPLLIGFIVLNSLATSSVTWAQDKNPNRANSSVISHRRHKPLSGLKIVLNAGHGGTELGAAGATGYLAKDLNLQVTK
LLQDELVQLGADVVMIREDDRDISLAERQKIIEQESPAIALTFHYRSLPDDGDAENTRGVSSYWYHPQAHSLATLLHNRL
VDDLGRPSYGLYWQNLALTRPHSSPSVLLELGFMSNPDDFEEAINPQEQKKLAKVLAEGITEWFRSL

Specific function: Probably involved in cell-wall metabolism [H]

COG id: COG0860

COG function: function code M; N-acetylmuramoyl-L-alanine amidase

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002508
- InterPro:   IPR017293
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01520 Amidase_3; PF08239 SH3_3 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 25195; Mature: 25195

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFTPLLIGFIVLNSLATSSVTWAQDKNPNRANSSVISHRRHKPLSGLKIVLNAGHGGTE
CCCHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCC
LGAAGATGYLAKDLNLQVTKLLQDELVQLGADVVMIREDDRDISLAERQKIIEQESPAIA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEE
LTFHYRSLPDDGDAENTRGVSSYWYHPQAHSLATLLHNRLVDDLGRPSYGLYWQNLALTR
EEEEECCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECEEEEC
PHSSPSVLLELGFMSNPDDFEEAINPQEQKKLAKVLAEGITEWFRSL
CCCCCCEEEEECCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKFTPLLIGFIVLNSLATSSVTWAQDKNPNRANSSVISHRRHKPLSGLKIVLNAGHGGTE
CCCHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCC
LGAAGATGYLAKDLNLQVTKLLQDELVQLGADVVMIREDDRDISLAERQKIIEQESPAIA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEE
LTFHYRSLPDDGDAENTRGVSSYWYHPQAHSLATLLHNRLVDDLGRPSYGLYWQNLALTR
EEEEECCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECEEEEC
PHSSPSVLLELGFMSNPDDFEEAINPQEQKKLAKVLAEGITEWFRSL
CCCCCCEEEEECCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]