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The map label for this gene is 17232432

Identifier: 17232432

GI number: 17232432

Start: 5896215

End: 5896637

Strand: Reverse

Name: 17232432

Synonym: all4940

Alternate gene names: NA

Gene position: 5896637-5896215 (Counterclockwise)

Preceding gene: 17232433

Following gene: 17232428

Centisome position: 91.94

GC content: 44.92

Gene sequence:

>423_bases
ATGAAAGCTGCTGAGTCTCTCCCTAATATCCAGATAAAAAGTATTGCAGGAATCACAGAGCCAACGATCTTACAATATTT
TGCTACCCTCAACGCTGGAGAATTTGCAGCCACCGCCGCGTTATTTGCTGTTGATGGCGTAATGTATCCACCGTTTGAAT
CTGGTATTGTGGGGCCAGATGCGATCGCTGCCTACTTACAACAAGAAGCGCAAGGTATCAAAGCTGAACCTCAGCAGGGA
CTGGCTGAAACCTCAGAAGACGGACACACTCAAGTACAAGTTTCTGGTAAAGCCCAAACTTCTTGGTGTGGTGTAAATGT
CTTATGGCTATTTACTCTTAACCAAGAAAAACAGATCATCCACACCCAAATTAAACTCTTAGCTTCTCCCCAAGAGTTAC
TGGCTTTGCGTCGTGAACAGTAG

Upstream 100 bases:

>100_bases
CAGCTTTTTTTATATTTACTTTTACATTTAAATTCAGGTTTGTAGTCAAGAAATTAGTTTTGACGACCTGAAACTTTATA
GTTTACATACGGGAAATTTT

Downstream 100 bases:

>100_bases
TCTTGATTAATTACTTTAACTTTGGGTGACAGTTGCGGCTTGTAGAGAACGTAGCAGCATTTTTCTTCCCAATTCAACAT
CTGATGGCGCACATTGCCAA

Product: hypothetical protein

Products: NA

Alternate protein names: OCP; RCP [H]

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MKAAESLPNIQIKSIAGITEPTILQYFATLNAGEFAATAALFAVDGVMYPPFESGIVGPDAIAAYLQQEAQGIKAEPQQG
LAETSEDGHTQVQVSGKAQTSWCGVNVLWLFTLNQEKQIIHTQIKLLASPQELLALRREQ

Sequences:

>Translated_140_residues
MKAAESLPNIQIKSIAGITEPTILQYFATLNAGEFAATAALFAVDGVMYPPFESGIVGPDAIAAYLQQEAQGIKAEPQQG
LAETSEDGHTQVQVSGKAQTSWCGVNVLWLFTLNQEKQIIHTQIKLLASPQELLALRREQ
>Mature_140_residues
MKAAESLPNIQIKSIAGITEPTILQYFATLNAGEFAATAALFAVDGVMYPPFESGIVGPDAIAAYLQQEAQGIKAEPQQG
LAETSEDGHTQVQVSGKAQTSWCGVNVLWLFTLNQEKQIIHTQIKLLASPQELLALRREQ

Specific function: Acts as a photo-protectant. Essential for inhibiting white and blue-green light non-photochemical quenching (NPQ). Binding carotenoids improves OCP's intrinsic photoprotectant activity by broadening its absorption spectrum and facilitating the dissipation

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane. Note=Associated with the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002075
- InterPro:   IPR015233 [H]

Pfam domain/function: PF09150 Carot_N; PF02136 NTF2 [H]

EC number: NA

Molecular weight: Translated: 15124; Mature: 15124

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAAESLPNIQIKSIAGITEPTILQYFATLNAGEFAATAALFAVDGVMYPPFESGIVGPD
CCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH
AIAAYLQQEAQGIKAEPQQGLAETSEDGHTQVQVSGKAQTSWCGVNVLWLFTLNQEKQII
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCCHHHH
HTQIKLLASPQELLALRREQ
HHHHHHHCCHHHHHHHHCCC
>Mature Secondary Structure
MKAAESLPNIQIKSIAGITEPTILQYFATLNAGEFAATAALFAVDGVMYPPFESGIVGPD
CCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH
AIAAYLQQEAQGIKAEPQQGLAETSEDGHTQVQVSGKAQTSWCGVNVLWLFTLNQEKQII
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCCHHHH
HTQIKLLASPQELLALRREQ
HHHHHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA