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The map label for this gene is 17232433

Identifier: 17232433

GI number: 17232433

Start: 5896856

End: 5897224

Strand: Reverse

Name: 17232433

Synonym: all4941

Alternate gene names: NA

Gene position: 5897224-5896856 (Counterclockwise)

Preceding gene: 17232437

Following gene: 17232432

Centisome position: 91.95

GC content: 40.11

Gene sequence:

>369_bases
ATGGGACGTTCTATTACACCAGCCGCTACAGGTGCAGCTCGTTTACAATTGGCTGAAGGTTTGTTAAACCAAATCAAACA
GATGTCTCATGCAGAACAGTTACAAGTAATGCGTGACTTGGCTGCAAAAAATAATACTCAAGTTTCTCGCTCTTACGGTA
TCCTCAGCAATAATACAAAGTTGGCTTTCTGGTATGAATTATCAGAATTAATGGTTAAAGGTTTCGTTGTACCTGTACCA
ACAGACTATAAAATCTCTCGTGATGGCTCTCAAGTATTAGAAGCACTGAAGGGATTAGACTTTGGTCAACAAATCACTGT
TCTCCGCAAAGTAGTAGCTGATATGGGTGTTGACCCCTTAGCTGATTAA

Upstream 100 bases:

>100_bases
CGGTATCCAAACTGGTGATGCTGTTGCTTCTACCATTACTGTATTTCAAGCCCTGAGCATAGACGACCAGTTGGCAGTAC
TATGGTACGCTTACACCGAA

Downstream 100 bases:

>100_bases
CCATCTACCAATATCTTTCCAACCTCAATGTCATACCAGATTTAGTTCCTAGATATTTATTTAGGAACTAAATCTTACTT
AAGTAAGAGTGTCTGTTATG

Product: hypothetical protein

Products: NA

Alternate protein names: OCP; RCP [H]

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MGRSITPAATGAARLQLAEGLLNQIKQMSHAEQLQVMRDLAAKNNTQVSRSYGILSNNTKLAFWYELSELMVKGFVVPVP
TDYKISRDGSQVLEALKGLDFGQQITVLRKVVADMGVDPLAD

Sequences:

>Translated_122_residues
MGRSITPAATGAARLQLAEGLLNQIKQMSHAEQLQVMRDLAAKNNTQVSRSYGILSNNTKLAFWYELSELMVKGFVVPVP
TDYKISRDGSQVLEALKGLDFGQQITVLRKVVADMGVDPLAD
>Mature_121_residues
GRSITPAATGAARLQLAEGLLNQIKQMSHAEQLQVMRDLAAKNNTQVSRSYGILSNNTKLAFWYELSELMVKGFVVPVPT
DYKISRDGSQVLEALKGLDFGQQITVLRKVVADMGVDPLAD

Specific function: Acts as a photo-protectant. Essential for inhibiting white and blue-green light non-photochemical quenching (NPQ). Binding carotenoids improves OCP's intrinsic photoprotectant activity by broadening its absorption spectrum and facilitating the dissipation

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane. Note=Associated with the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002075
- InterPro:   IPR015233 [H]

Pfam domain/function: PF09150 Carot_N; PF02136 NTF2 [H]

EC number: NA

Molecular weight: Translated: 13350; Mature: 13218

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRSITPAATGAARLQLAEGLLNQIKQMSHAEQLQVMRDLAAKNNTQVSRSYGILSNNTK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEECCCCE
LAFWYELSELMVKGFVVPVPTDYKISRDGSQVLEALKGLDFGQQITVLRKVVADMGVDPL
EEHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
AD
CC
>Mature Secondary Structure 
GRSITPAATGAARLQLAEGLLNQIKQMSHAEQLQVMRDLAAKNNTQVSRSYGILSNNTK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEECCCCE
LAFWYELSELMVKGFVVPVPTDYKISRDGSQVLEALKGLDFGQQITVLRKVVADMGVDPL
EEHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
AD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA