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The map label for this gene is ygjM [C]

Identifier: 17232347

GI number: 17232347

Start: 5784388

End: 5784768

Strand: Reverse

Name: ygjM [C]

Synonym: all4855

Alternate gene names: 17232347

Gene position: 5784768-5784388 (Counterclockwise)

Preceding gene: 17232348

Following gene: 17232337

Centisome position: 90.19

GC content: 39.37

Gene sequence:

>381_bases
ATGCTGGAACCCCGTCCGATTCGTAATGAAGCTGATTATCGTGCGGCGCTTGATGAAATTGCAAGATTGTTCGATTCAGA
ATTAAATACACCAGAGTCTGACAGGTTGGAAGTATTAACTACACTTGTGGAAGCCTACGAACAAAAACATTACCAAATTG
CAGCACCAGATCCTATTGAAGCAATCTTATATTATCTTGAATCCCGTGGGTTATCTGTAAATGATTTAGAGCCTGTCATT
GGCAGCAAAACAGAAATTAGCAACATTTTACATCGTAGACAGGCGTTAACTTTGGAAATAATTCGGCGTTTACATCAACA
ATTGGGGATTCCAGCAGAGGTTTTAATTCAACCATACTCCTTGATGGAAAATTCAGCTTGA

Upstream 100 bases:

>100_bases
TCACATCCGTTATGACATTGGAATTATTTTTATTCGTTTTCTGGGAACACATAAAGAATACGATAACGTAGATGCAACAA
GTATTTGAGGCAGTAATATT

Downstream 100 bases:

>100_bases
TTCCGTGAATGCGTGTTAGTTATTAGTTGTTAATGTTATTACCAAATTCGTTGCAGATTGAGTATAAACCCAGGTAATAC
ATCTTCACCCGAAAGAGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: Transcription Regulator With HTH Domain; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator; XRE Family Transcriptional Regulator; Transcription Regulator; Transcription Regulator With HTH Domain Protein; Helix-Turn-Helix Domain Protein; Transcriptional Regulator Xre Family; Transcription Regulator Containing HTH Domain; Transcription Regulator Protein; Transcritional Regulatior Protein; Transcription Regulator Containing Helix Turn Helix Domain; HTH_3 Family Transcriptional Regulator Protein; HTH-Type Transcriptional Regulator YgjM; Transcriptional Regulator Protein; Transcription Regulator With HTH Domain-Containing Protein

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MLEPRPIRNEADYRAALDEIARLFDSELNTPESDRLEVLTTLVEAYEQKHYQIAAPDPIEAILYYLESRGLSVNDLEPVI
GSKTEISNILHRRQALTLEIIRRLHQQLGIPAEVLIQPYSLMENSA

Sequences:

>Translated_126_residues
MLEPRPIRNEADYRAALDEIARLFDSELNTPESDRLEVLTTLVEAYEQKHYQIAAPDPIEAILYYLESRGLSVNDLEPVI
GSKTEISNILHRRQALTLEIIRRLHQQLGIPAEVLIQPYSLMENSA
>Mature_126_residues
MLEPRPIRNEADYRAALDEIARLFDSELNTPESDRLEVLTTLVEAYEQKHYQIAAPDPIEAILYYLESRGLSVNDLEPVI
GSKTEISNILHRRQALTLEIIRRLHQQLGIPAEVLIQPYSLMENSA

Specific function: Unknown

COG id: COG5499

COG function: function code K; Predicted transcription regulator containing HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14426; Mature: 14426

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEPRPIRNEADYRAALDEIARLFDSELNTPESDRLEVLTTLVEAYEQKHYQIAAPDPIE
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
AILYYLESRGLSVNDLEPVIGSKTEISNILHRRQALTLEIIRRLHQQLGIPAEVLIQPYS
HHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHH
LMENSA
HHCCCC
>Mature Secondary Structure
MLEPRPIRNEADYRAALDEIARLFDSELNTPESDRLEVLTTLVEAYEQKHYQIAAPDPIE
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
AILYYLESRGLSVNDLEPVIGSKTEISNILHRRQALTLEIIRRLHQQLGIPAEVLIQPYS
HHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHH
LMENSA
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA