Click here to switch to the map view.

The map label for this gene is araQ [H]

Identifier: 17232316

GI number: 17232316

Start: 5743901

End: 5744740

Strand: Reverse

Name: araQ [H]

Synonym: all4824

Alternate gene names: 17232316

Gene position: 5744740-5743901 (Counterclockwise)

Preceding gene: 17232317

Following gene: 17232314

Centisome position: 89.57

GC content: 42.02

Gene sequence:

>840_bases
ATGAATTGGAAAACGCAAAATTCACCCTGGCGAACGCTGGTAATGTATGGTTTATTAGGTGTGATCGCCTTCATCACTCT
CTTCCCTTTGTTGTGGCTCATCAGCACTGCTTTAAAATCACCTACAGAAAATATTTTTCAGTCTCCACCGCAGTTATTAC
CAAATCAACCAACGGTAGATAATTTTTTTAAGGTGTGGAATTCTCTGCCATTTGGGCAATATTTATACAACAGTACTTTA
GTCTCTGTACTGACTGTAGGGTTAAATCTCTTATTTTGCTCCTTAGCCGCTTACCCCTTAGCAAGACTATCATTTCCGGG
GAGAGACTGGATTTTTATTGCGATCGTTTCTACGATTATGATTCCCTTCCAAATCGTGATGATACCACTGTACATTTTGA
CTGTGCAGTTGGGCTTACGCAATACTTATCTCGGTATGATGTTTCCCAGTTTGGCTTCTGCTTTTGGTATTTTCCTTTTA
AGACAAGCTTTTATGGGTGTTCCCAAAGAAATAGAAGAAGCTGCCAGGATGGATGGTAGTTCGGAGTTAGGCTTGTGGTG
GCATATTATGTTACCTGCGGTAAGACCAGCATTGGTAACTCTAGCTATTTTCGTCTTTATCGGCGCTTGGAGTGACTTTC
TGTGGCCGTTGATTGTGATTCAAGATGAGAATTTGTATACCTTGCCTTTGGGTGTAGCTAAACTGGCGGGGACGTTTTCC
CTTGACTGGCGTTTGGTTGCGGCTGGTTCCGTAATTGCGATCGCCCCTGTACTGTTACTATTTCTTATACTACAGCGTTA
CATCGTAGAAACAGATATTGGTAGTGGTGTCAAAGGTTAA

Upstream 100 bases:

>100_bases
AGAAAATTGGGATCAGCCTTTACAAGCAGTCTTGACAGAAACATCTTTTCATGTTAATAGTTAACGGCTAACTGTCAACC
GTCAACTGTTAACGAACAGA

Downstream 100 bases:

>100_bases
CTAACAAGCACCGCTTTTTTTTAGCACTACCCACACGGTTTTTAATATCAGATTGAGGTCGTAAGTTATAGACCATTTAC
GTTGATAATCTAAATCCATC

Product: permease protein of sugar ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MNWKTQNSPWRTLVMYGLLGVIAFITLFPLLWLISTALKSPTENIFQSPPQLLPNQPTVDNFFKVWNSLPFGQYLYNSTL
VSVLTVGLNLLFCSLAAYPLARLSFPGRDWIFIAIVSTIMIPFQIVMIPLYILTVQLGLRNTYLGMMFPSLASAFGIFLL
RQAFMGVPKEIEEAARMDGSSELGLWWHIMLPAVRPALVTLAIFVFIGAWSDFLWPLIVIQDENLYTLPLGVAKLAGTFS
LDWRLVAAGSVIAIAPVLLLFLILQRYIVETDIGSGVKG

Sequences:

>Translated_279_residues
MNWKTQNSPWRTLVMYGLLGVIAFITLFPLLWLISTALKSPTENIFQSPPQLLPNQPTVDNFFKVWNSLPFGQYLYNSTL
VSVLTVGLNLLFCSLAAYPLARLSFPGRDWIFIAIVSTIMIPFQIVMIPLYILTVQLGLRNTYLGMMFPSLASAFGIFLL
RQAFMGVPKEIEEAARMDGSSELGLWWHIMLPAVRPALVTLAIFVFIGAWSDFLWPLIVIQDENLYTLPLGVAKLAGTFS
LDWRLVAAGSVIAIAPVLLLFLILQRYIVETDIGSGVKG
>Mature_279_residues
MNWKTQNSPWRTLVMYGLLGVIAFITLFPLLWLISTALKSPTENIFQSPPQLLPNQPTVDNFFKVWNSLPFGQYLYNSTL
VSVLTVGLNLLFCSLAAYPLARLSFPGRDWIFIAIVSTIMIPFQIVMIPLYILTVQLGLRNTYLGMMFPSLASAFGIFLL
RQAFMGVPKEIEEAARMDGSSELGLWWHIMLPAVRPALVTLAIFVFIGAWSDFLWPLIVIQDENLYTLPLGVAKLAGTFS
LDWRLVAAGSVIAIAPVLLLFLILQRYIVETDIGSGVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=279, Percent_Identity=29.3906810035842, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1787571, Length=276, Percent_Identity=30.7971014492754, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1790464, Length=273, Percent_Identity=26.3736263736264, Blast_Score=81, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31162; Mature: 31162

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: PS00079 MULTICOPPER_OXIDASE1 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWKTQNSPWRTLVMYGLLGVIAFITLFPLLWLISTALKSPTENIFQSPPQLLPNQPTVD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCCCCHH
NFFKVWNSLPFGQYLYNSTLVSVLTVGLNLLFCSLAAYPLARLSFPGRDWIFIAIVSTIM
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
IPFQIVMIPLYILTVQLGLRNTYLGMMFPSLASAFGIFLLRQAFMGVPKEIEEAARMDGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
SELGLWWHIMLPAVRPALVTLAIFVFIGAWSDFLWPLIVIQDENLYTLPLGVAKLAGTFS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCEEEECHHHHHHHCCCC
LDWRLVAAGSVIAIAPVLLLFLILQRYIVETDIGSGVKG
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNWKTQNSPWRTLVMYGLLGVIAFITLFPLLWLISTALKSPTENIFQSPPQLLPNQPTVD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCCCCHH
NFFKVWNSLPFGQYLYNSTLVSVLTVGLNLLFCSLAAYPLARLSFPGRDWIFIAIVSTIM
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
IPFQIVMIPLYILTVQLGLRNTYLGMMFPSLASAFGIFLLRQAFMGVPKEIEEAARMDGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
SELGLWWHIMLPAVRPALVTLAIFVFIGAWSDFLWPLIVIQDENLYTLPLGVAKLAGTFS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCEEEECHHHHHHHCCCC
LDWRLVAAGSVIAIAPVLLLFLILQRYIVETDIGSGVKG
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]