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The map label for this gene is fni [H]

Identifier: 17232083

GI number: 17232083

Start: 5488414

End: 5489466

Strand: Reverse

Name: fni [H]

Synonym: all4591

Alternate gene names: 17232083

Gene position: 5489466-5488414 (Counterclockwise)

Preceding gene: 17232085

Following gene: 17232082

Centisome position: 85.59

GC content: 47.01

Gene sequence:

>1053_bases
GTGAACCCACCTACTACCAGCGATTCTGCTCAAACCCAATCACGCAAAGCAGACCATATCCGCATCTGCTTGGAAGAAGA
CGTACAATTCCGCGACACTACCAACGGACTAGAACGCTATCGTTTCACTCATTCTTGCTTACCAGAAATAGACCGCAACG
ATATTGATCTGAGCGCGACTTTTTTAGGTAAAAAGCTGAATGCACCTTTGTTAATCTCCTCCATGACTGGAGGAACCGAA
GAAGCAGGAATCATTAACCAGCGTTTAGCCGGACTTGCCCAACACTATAAATTGGCAATGGGTGTGGGTTCCCAACGGGT
GGCAGTAGAAAAACCCCAGGTAGCTGACACATTTGCCATCCGCAAGTATGCGCCCGATGTGCTGCTGTTCGCTAATGTAG
GTGCGGTGCAACTTAACTACAAATATGGTTTAGATGAATGTCTGCGTATCATCGATATGCTAGAGGCGGATGCTTTGATT
CTGCACATCAATCCTCTACAAGAGTGTATTCAACCTAGAGGTGATGTGAATTTCCGAGGATTACTTGACAAAATAAATCA
GCTATGCAGCAAACTGCCAGTACCTGCAATTGCGAAAGAAGTGGGCAATGGCATTTCCGGCGCAATGGCTGAAAAGTTGA
TTGCTGCGGGAGTGCAAGCAATTGATGTAGCCGGTGCGGGTGGTACTTCTTGGGCAAAGGTAGAAGGAGAAAGAGCAGAG
AACGCTATGCAAAGGCGTTTAGGTAGAACCTTTGCGGATTGGGGAATGCCCACAGCAGAGTGTATTACAAGTGTAAGAGC
GATCGCCCCCCATATTCCCTTAATCGCCTCTGGTGGTTTGCGTGATGGACTTGACGTTGCTAAAGCGATCGCCTTAGGTG
CAGATATCGCCGGTTTAGCTATGCCTTTTCTGCAAGCGGCCGTAGAATCAGAAGCCGCCCTACAAGATTTAACTGAGGTA
TTAATTGCGGAAATCACCACAGTCTTATTTTGCACCGGCAACGCCAATTTAGATCAGTTAAAACACTCTGGTAGTTTACA
ACGCCTACAATAA

Upstream 100 bases:

>100_bases
GCACAGACTCTGGCTACAGTAAGTTACGATGCTGCCTTTCCACCTCTCTGGGTGAGTAACCCATACAATAGTAATCGCAA
GCCATAAGTCATCCCTACCA

Downstream 100 bases:

>100_bases
ATGAATAGGTAGAAATGGTTAGGCATGATTGGCTAATCACTAATGACTAAATAACTAAACTAAATAACTAATAACTAATG
AGTAACTTCTTTAAACAAAC

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MNPPTTSDSAQTQSRKADHIRICLEEDVQFRDTTNGLERYRFTHSCLPEIDRNDIDLSATFLGKKLNAPLLISSMTGGTE
EAGIINQRLAGLAQHYKLAMGVGSQRVAVEKPQVADTFAIRKYAPDVLLFANVGAVQLNYKYGLDECLRIIDMLEADALI
LHINPLQECIQPRGDVNFRGLLDKINQLCSKLPVPAIAKEVGNGISGAMAEKLIAAGVQAIDVAGAGGTSWAKVEGERAE
NAMQRRLGRTFADWGMPTAECITSVRAIAPHIPLIASGGLRDGLDVAKAIALGADIAGLAMPFLQAAVESEAALQDLTEV
LIAEITTVLFCTGNANLDQLKHSGSLQRLQ

Sequences:

>Translated_350_residues
MNPPTTSDSAQTQSRKADHIRICLEEDVQFRDTTNGLERYRFTHSCLPEIDRNDIDLSATFLGKKLNAPLLISSMTGGTE
EAGIINQRLAGLAQHYKLAMGVGSQRVAVEKPQVADTFAIRKYAPDVLLFANVGAVQLNYKYGLDECLRIIDMLEADALI
LHINPLQECIQPRGDVNFRGLLDKINQLCSKLPVPAIAKEVGNGISGAMAEKLIAAGVQAIDVAGAGGTSWAKVEGERAE
NAMQRRLGRTFADWGMPTAECITSVRAIAPHIPLIASGGLRDGLDVAKAIALGADIAGLAMPFLQAAVESEAALQDLTEV
LIAEITTVLFCTGNANLDQLKHSGSLQRLQ
>Mature_350_residues
MNPPTTSDSAQTQSRKADHIRICLEEDVQFRDTTNGLERYRFTHSCLPEIDRNDIDLSATFLGKKLNAPLLISSMTGGTE
EAGIINQRLAGLAQHYKLAMGVGSQRVAVEKPQVADTFAIRKYAPDVLLFANVGAVQLNYKYGLDECLRIIDMLEADALI
LHINPLQECIQPRGDVNFRGLLDKINQLCSKLPVPAIAKEVGNGISGAMAEKLIAAGVQAIDVAGAGGTSWAKVEGERAE
NAMQRRLGRTFADWGMPTAECITSVRAIAPHIPLIASGGLRDGLDVAKAIALGADIAGLAMPFLQAAVESEAALQDLTEV
LIAEITTVLFCTGNANLDQLKHSGSLQRLQ

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 37569; Mature: 37569

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPPTTSDSAQTQSRKADHIRICLEEDVQFRDTTNGLERYRFTHSCLPEIDRNDIDLSAT
CCCCCCCCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
FLGKKLNAPLLISSMTGGTEEAGIINQRLAGLAQHYKLAMGVGSQRVAVEKPQVADTFAI
HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHH
RKYAPDVLLFANVGAVQLNYKYGLDECLRIIDMLEADALILHINPLQECIQPRGDVNFRG
HHHCCCEEEEECCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCHHH
LLDKINQLCSKLPVPAIAKEVGNGISGAMAEKLIAAGVQAIDVAGAGGTSWAKVEGERAE
HHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCHHEEECCCCCCCCCCCCCHHHH
NAMQRRLGRTFADWGMPTAECITSVRAIAPHIPLIASGGLRDGLDVAKAIALGADIAGLA
HHHHHHHCCHHHHHCCCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCHHHHH
MPFLQAAVESEAALQDLTEVLIAEITTVLFCTGNANLDQLKHSGSLQRLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHCCCCHHCCC
>Mature Secondary Structure
MNPPTTSDSAQTQSRKADHIRICLEEDVQFRDTTNGLERYRFTHSCLPEIDRNDIDLSAT
CCCCCCCCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
FLGKKLNAPLLISSMTGGTEEAGIINQRLAGLAQHYKLAMGVGSQRVAVEKPQVADTFAI
HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHH
RKYAPDVLLFANVGAVQLNYKYGLDECLRIIDMLEADALILHINPLQECIQPRGDVNFRG
HHHCCCEEEEECCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCHHH
LLDKINQLCSKLPVPAIAKEVGNGISGAMAEKLIAAGVQAIDVAGAGGTSWAKVEGERAE
HHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCHHEEECCCCCCCCCCCCCHHHH
NAMQRRLGRTFADWGMPTAECITSVRAIAPHIPLIASGGLRDGLDVAKAIALGADIAGLA
HHHHHHHCCHHHHHCCCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCHHHHH
MPFLQAAVESEAALQDLTEVLIAEITTVLFCTGNANLDQLKHSGSLQRLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA