Click here to switch to the map view.

The map label for this gene is tri1 [H]

Identifier: 17231582

GI number: 17231582

Start: 4928362

End: 4929486

Strand: Reverse

Name: tri1 [H]

Synonym: all4090

Alternate gene names: 17231582

Gene position: 4929486-4928362 (Counterclockwise)

Preceding gene: 17231583

Following gene: 17231581

Centisome position: 76.86

GC content: 40.36

Gene sequence:

>1125_bases
ATGAATGGAGTAAATTGGAAAGTAATTAAGGAAAAGTATAAACCTAATGTATTACAAGCGAATTCAGGTCAAAAAGTTGC
TGCTATTTTCAATGAAATGTTATCTGAACTCAAAACTTCCCACACCCGTTACTATACTCAAGACGATCTGGCTTACTATC
AACTTTTAGGCATTTTTTATGCTAGAAGCATGGAGTTACCGAAAGAATTAAAAAAGTTTTTTCCTAACGGTAAATTTGAA
TACACTGGTGTTGGTTTATCTACTAAAGATATTAATGATAAGACTTTTATTAGCTCTATTTTGGATGACAGTCCTGCTGC
TAGGGCTGGCTTAAAAGTAGGTGACCAGATTATTAATGTAGATGGTAATCAATATCACCCCATACGCTCTTTTGCAGGTA
AAGCAGGGCAAACAGTCAAAATGTTGATCCAGCGATCGCCTACGGTGGGCGGAACGCCATCGCCTCAACTAACTAGTCGC
CAAGAAATTGCTGTAGTACCGAAGGTATTTGATGCCAGCACAATGTTTTTGGAAGCTCAAATGGCTAGCATTCAGATCCT
CGAACAAGAAAATAAAAAAATTGGCTACGTCCATATCTGGTCAAATGCAGCTGATCCATATCAGCAAGAGCTTCAGAATG
AGCTAATCTATGGTCGCCTGAGAAACGCAGATGGGTTAATTTTGGATCTCCGAGATGGATGGGGAGGGGGAGATATTAGT
TACCTCAACATCTTCACTGCTAAACAAAGTCCCAGTGTCACTCATGTTCAACGTAATGGCCGCCGATATACCTATAATTA
TCAATGGAAAAAACCTGTAGTGATGTTGGTAAACGAAGGAAGCCGCAGCAGTAAGGAAATTCTGGCGTTTAACTTTCAAC
AAAATCAGATTGGGCCAGTCCTCGGTACTAAAACAACAGGAGCCGTAGTTGCTGGTCGTCCTTATATTATGCAGGATGGC
AGCTTGCTTTACGTAGCAGTCGCCGATGTTTTTCTCAATGGTAATCAAAGATTAGAAGGTAAAGGAGTTACCCCAGACAT
TAACGTTCCCTTTTCCTTGGAATATGCACAAGGAGTAGACCCGCAAAAACAAACAGCAATAGAGACTCTACTCAAAGCAT
TGTGA

Upstream 100 bases:

>100_bases
CTGGATAAATTCACCACTTTTACCATTACTAGCTAAACCTGAGACTGGAATTTTTGAGCAAGTTTGGCAAACAGTAAATG
ATAATTTTTATGATCCAAAA

Downstream 100 bases:

>100_bases
TTTTCGCTGTCTCCTGCTGATTTTGCTTAGACGATGAACAGTGTTTGTAAACACTTAGTAAATATTAGAGAAATATTCAA
AACCCCGTGTAAACTTATAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MNGVNWKVIKEKYKPNVLQANSGQKVAAIFNEMLSELKTSHTRYYTQDDLAYYQLLGIFYARSMELPKELKKFFPNGKFE
YTGVGLSTKDINDKTFISSILDDSPAARAGLKVGDQIINVDGNQYHPIRSFAGKAGQTVKMLIQRSPTVGGTPSPQLTSR
QEIAVVPKVFDASTMFLEAQMASIQILEQENKKIGYVHIWSNAADPYQQELQNELIYGRLRNADGLILDLRDGWGGGDIS
YLNIFTAKQSPSVTHVQRNGRRYTYNYQWKKPVVMLVNEGSRSSKEILAFNFQQNQIGPVLGTKTTGAVVAGRPYIMQDG
SLLYVAVADVFLNGNQRLEGKGVTPDINVPFSLEYAQGVDPQKQTAIETLLKAL

Sequences:

>Translated_374_residues
MNGVNWKVIKEKYKPNVLQANSGQKVAAIFNEMLSELKTSHTRYYTQDDLAYYQLLGIFYARSMELPKELKKFFPNGKFE
YTGVGLSTKDINDKTFISSILDDSPAARAGLKVGDQIINVDGNQYHPIRSFAGKAGQTVKMLIQRSPTVGGTPSPQLTSR
QEIAVVPKVFDASTMFLEAQMASIQILEQENKKIGYVHIWSNAADPYQQELQNELIYGRLRNADGLILDLRDGWGGGDIS
YLNIFTAKQSPSVTHVQRNGRRYTYNYQWKKPVVMLVNEGSRSSKEILAFNFQQNQIGPVLGTKTTGAVVAGRPYIMQDG
SLLYVAVADVFLNGNQRLEGKGVTPDINVPFSLEYAQGVDPQKQTAIETLLKAL
>Mature_374_residues
MNGVNWKVIKEKYKPNVLQANSGQKVAAIFNEMLSELKTSHTRYYTQDDLAYYQLLGIFYARSMELPKELKKFFPNGKFE
YTGVGLSTKDINDKTFISSILDDSPAARAGLKVGDQIINVDGNQYHPIRSFAGKAGQTVKMLIQRSPTVGGTPSPQLTSR
QEIAVVPKVFDASTMFLEAQMASIQILEQENKKIGYVHIWSNAADPYQQELQNELIYGRLRNADGLILDLRDGWGGGDIS
YLNIFTAKQSPSVTHVQRNGRRYTYNYQWKKPVVMLVNEGSRSSKEILAFNFQQNQIGPVLGTKTTGAVVAGRPYIMQDG
SLLYVAVADVFLNGNQRLEGKGVTPDINVPFSLEYAQGVDPQKQTAIETLLKAL

Specific function: Degrades oligopeptides in a sequential manner [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S41B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011659
- InterPro:   IPR001478
- InterPro:   IPR012393
- InterPro:   IPR005151
- InterPro:   IPR015943
- InterPro:   IPR001680 [H]

Pfam domain/function: PF07676 PD40; PF03572 Peptidase_S41 [H]

EC number: NA

Molecular weight: Translated: 41690; Mature: 41690

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGVNWKVIKEKYKPNVLQANSGQKVAAIFNEMLSELKTSHTRYYTQDDLAYYQLLGIFY
CCCCCEEEEHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHH
ARSMELPKELKKFFPNGKFEYTGVGLSTKDINDKTFISSILDDSPAARAGLKVGDQIINV
HHCCCCHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCEEEEC
DGNQYHPIRSFAGKAGQTVKMLIQRSPTVGGTPSPQLTSRQEIAVVPKVFDASTMFLEAQ
CCCCCCCHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHEEHHH
MASIQILEQENKKIGYVHIWSNAADPYQQELQNELIYGRLRNADGLILDLRDGWGGGDIS
HHHHHEEECCCCEEEEEEEECCCCCHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCEE
YLNIFTAKQSPSVTHVQRNGRRYTYNYQWKKPVVMLVNEGSRSSKEILAFNFQQNQIGPV
EEEEEECCCCCCEEEHHHCCCEEEEEEEECCCEEEEEECCCCCCCEEEEEEECCCCCCCC
LGTKTTGAVVAGRPYIMQDGSLLYVAVADVFLNGNQRLEGKGVTPDINVPFSLEYAQGVD
CCCCCCCEEEECCCEEEECCCEEEEEEEEHHCCCCCEECCCCCCCCCCCCEEEHHHCCCC
PQKQTAIETLLKAL
HHHHHHHHHHHHHC
>Mature Secondary Structure
MNGVNWKVIKEKYKPNVLQANSGQKVAAIFNEMLSELKTSHTRYYTQDDLAYYQLLGIFY
CCCCCEEEEHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHH
ARSMELPKELKKFFPNGKFEYTGVGLSTKDINDKTFISSILDDSPAARAGLKVGDQIINV
HHCCCCHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCEEEEC
DGNQYHPIRSFAGKAGQTVKMLIQRSPTVGGTPSPQLTSRQEIAVVPKVFDASTMFLEAQ
CCCCCCCHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHEEHHH
MASIQILEQENKKIGYVHIWSNAADPYQQELQNELIYGRLRNADGLILDLRDGWGGGDIS
HHHHHEEECCCCEEEEEEEECCCCCHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCEE
YLNIFTAKQSPSVTHVQRNGRRYTYNYQWKKPVVMLVNEGSRSSKEILAFNFQQNQIGPV
EEEEEECCCCCCEEEHHHCCCEEEEEEEECCCEEEEEECCCCCCCEEEEEEECCCCCCCC
LGTKTTGAVVAGRPYIMQDGSLLYVAVADVFLNGNQRLEGKGVTPDINVPFSLEYAQGVD
CCCCCCCEEEECCCEEEECCCEEEEEEEEHHCCCCCEECCCCCCCCCCCCEEEHHHCCCC
PQKQTAIETLLKAL
HHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12000953; 11347893 [H]