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The map label for this gene is psbC [H]

Identifier: 17231494

GI number: 17231494

Start: 4820689

End: 4822119

Strand: Reverse

Name: psbC [H]

Synonym: all4002

Alternate gene names: 17231494

Gene position: 4822119-4820689 (Counterclockwise)

Preceding gene: 17231495

Following gene: 17231493

Centisome position: 75.18

GC content: 44.51

Gene sequence:

>1431_bases
ATGACTACGGCAACAATCAACCCCCAACAATATGGATGGTGGGCAGGTAACGCTAGGTTTATCAATCTCTCAGGTCGTCT
ATTAGGAGCGCACATTGCCCATGCAGGCTTAATTATCCTGTGGGCAGGGGCAATGACCCTATTTGAAATCACCAAATACA
ACCCCTCCCTACCTATATACGAACAAGGGTTAATCTTACTGCCTCATTTAGCAACCTTGGGATTTGGTATTGGTGATGGG
GGACAAATCATTGATACTTATCCTTATTTCGTCATTGGTGTAGTGCATTTAGTTAGTTCGGCTGTACTCGCTGCGGGTGG
TATTTATCATGCCTTGTTGGGGCCAGAAGTATTGCCCGAAAACAATCAATTTCCTGGTTTCTTTGGTTATGACTGGGAAG
ATGAAGACAAAATGACCACAATCATCGGCATTCACTTACTGTTGTTAGGTGCAGGTGCTTGGTTGTTGGTCGCAAAAGCC
TTATTTTGGGGCGGTCTTTATGATTCAACGGTTGCATCTGTCAGAGTCATTACTGAACCCACTGTCAATCCGGCTCGGAT
TTTTGGTTATCTCTTCGGTGCATTTGGCAAGCAGGGAATGGCTGCTGTCAATAACTTAGAAGATGTTGTTGGTGGCCATA
TTTGGGTAGGCATTCTCTGCATTGGTGGGGGATTTTGGCATATCTTGACTCAACCTTTTGCTTGGGCGAAAAAGGTACTT
TTCTGGTCTGGTGAGGCCTACTTATCCTATAGTCTTGCTGCTCTAGCCTATATGGGTTTATTAGCCGCATACTTTGTGAC
TGTTAATGACACCGTTTATCCGACTGAGTTCTATGGCCCTTTGGGATTCAGTAGTACATCAGGGGTAATTTCGGTTCGTA
CTTGGTTAGCAACCAGCCATTTTGCTTTGGCAATTGTGTTTCTATCTGGTCATATATGGCACGCTTTGAGAGTGCGTGTC
CTAGAGGCTGGATTGAATTTTGAACAGGGAGTAGTCAACTATCTGGATACACCAGAACTAGGAAACCTCCAAACCCCAAT
TAATACTTCTGATTTGACGCTGAAGTTTTTGGTAAATCTGCCAATTTATCGTCCGGGTTTGTCTGCCTTTGCCCGTGGCT
TAGAAATCGGCATGGCTCATGGCTATTTCCTGCTTGGCCCCTTCGTCAAATTAGGCCCCTTGCGGAATACAGAGTTTGCT
AATCAAGCCGGACTGCTTGCAACCATTGGTCTGTTATTGATTTTATCAATATGCCTGTGGCTATATGGCAGTGCATGGTT
TCAAGAAGGCAAATCTCCCCAAGGTGAGCTACCAGAAAATCTCAAAACAGCTAAGTCTTGGAGCGAGTTTAATGCTGGTT
GGATAGTTGGTAGCTGCGGCGGAGCTTTATTTGCTTATTTGCTCGTAACTAATAGCAGTTTGTTTTTCTAA

Upstream 100 bases:

>100_bases
TCTTCCTGCAAGGGCATCTTTGGCACGCCCTCCGCGCGGCAGGTTTTGATTTCCGGACCGGAAAAGTTTTACTTCCAACT
CGTGGGCAGGTAATTTAACT

Downstream 100 bases:

>100_bases
ATATCAGGTTTCCAAATGTTGAAAAAAGTCGGGTTATTCTACAGTAATCAAACTTGTAAAAATGAATTGTGACCTGATGT
TTGACCACTTATGCACACAG

Product: hypothetical protein

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MTTATINPQQYGWWAGNARFINLSGRLLGAHIAHAGLIILWAGAMTLFEITKYNPSLPIYEQGLILLPHLATLGFGIGDG
GQIIDTYPYFVIGVVHLVSSAVLAAGGIYHALLGPEVLPENNQFPGFFGYDWEDEDKMTTIIGIHLLLLGAGAWLLVAKA
LFWGGLYDSTVASVRVITEPTVNPARIFGYLFGAFGKQGMAAVNNLEDVVGGHIWVGILCIGGGFWHILTQPFAWAKKVL
FWSGEAYLSYSLAALAYMGLLAAYFVTVNDTVYPTEFYGPLGFSSTSGVISVRTWLATSHFALAIVFLSGHIWHALRVRV
LEAGLNFEQGVVNYLDTPELGNLQTPINTSDLTLKFLVNLPIYRPGLSAFARGLEIGMAHGYFLLGPFVKLGPLRNTEFA
NQAGLLATIGLLLILSICLWLYGSAWFQEGKSPQGELPENLKTAKSWSEFNAGWIVGSCGGALFAYLLVTNSSLFF

Sequences:

>Translated_476_residues
MTTATINPQQYGWWAGNARFINLSGRLLGAHIAHAGLIILWAGAMTLFEITKYNPSLPIYEQGLILLPHLATLGFGIGDG
GQIIDTYPYFVIGVVHLVSSAVLAAGGIYHALLGPEVLPENNQFPGFFGYDWEDEDKMTTIIGIHLLLLGAGAWLLVAKA
LFWGGLYDSTVASVRVITEPTVNPARIFGYLFGAFGKQGMAAVNNLEDVVGGHIWVGILCIGGGFWHILTQPFAWAKKVL
FWSGEAYLSYSLAALAYMGLLAAYFVTVNDTVYPTEFYGPLGFSSTSGVISVRTWLATSHFALAIVFLSGHIWHALRVRV
LEAGLNFEQGVVNYLDTPELGNLQTPINTSDLTLKFLVNLPIYRPGLSAFARGLEIGMAHGYFLLGPFVKLGPLRNTEFA
NQAGLLATIGLLLILSICLWLYGSAWFQEGKSPQGELPENLKTAKSWSEFNAGWIVGSCGGALFAYLLVTNSSLFF
>Mature_475_residues
TTATINPQQYGWWAGNARFINLSGRLLGAHIAHAGLIILWAGAMTLFEITKYNPSLPIYEQGLILLPHLATLGFGIGDGG
QIIDTYPYFVIGVVHLVSSAVLAAGGIYHALLGPEVLPENNQFPGFFGYDWEDEDKMTTIIGIHLLLLGAGAWLLVAKAL
FWGGLYDSTVASVRVITEPTVNPARIFGYLFGAFGKQGMAAVNNLEDVVGGHIWVGILCIGGGFWHILTQPFAWAKKVLF
WSGEAYLSYSLAALAYMGLLAAYFVTVNDTVYPTEFYGPLGFSSTSGVISVRTWLATSHFALAIVFLSGHIWHALRVRVL
EAGLNFEQGVVNYLDTPELGNLQTPINTSDLTLKFLVNLPIYRPGLSAFARGLEIGMAHGYFLLGPFVKLGPLRNTEFAN
QAGLLATIGLLLILSICLWLYGSAWFQEGKSPQGELPENLKTAKSWSEFNAGWIVGSCGGALFAYLLVTNSSLFF

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 51685; Mature: 51554

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTATINPQQYGWWAGNARFINLSGRLLGAHIAHAGLIILWAGAMTLFEITKYNPSLPIY
CCCCCCCCCCCCEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
EQGLILLPHLATLGFGIGDGGQIIDTYPYFVIGVVHLVSSAVLAAGGIYHALLGPEVLPE
CCCCEEECCHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC
NNQFPGFFGYDWEDEDKMTTIIGIHLLLLGAGAWLLVAKALFWGGLYDSTVASVRVITEP
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHEEEEEECC
TVNPARIFGYLFGAFGKQGMAAVNNLEDVVGGHIWVGILCIGGGFWHILTQPFAWAKKVL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHEEEEHHHCCCHHHHHCCHHHHHHHHH
FWSGEAYLSYSLAALAYMGLLAAYFVTVNDTVYPTEFYGPLGFSSTSGVISVRTWLATSH
EECCCHHHHHHHHHHHHHHHHHHHHHEECCEECCHHCCCCCCCCCCCCEEEEHHHHHHHH
FALAIVFLSGHIWHALRVRVLEAGLNFEQGVVNYLDTPELGNLQTPINTSDLTLKFLVNL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEC
PIYRPGLSAFARGLEIGMAHGYFLLGPFVKLGPLRNTEFANQAGLLATIGLLLILSICLW
CCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
LYGSAWFQEGKSPQGELPENLKTAKSWSEFNAGWIVGSCGGALFAYLLVTNSSLFF
HHCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TTATINPQQYGWWAGNARFINLSGRLLGAHIAHAGLIILWAGAMTLFEITKYNPSLPIY
CCCCCCCCCCCEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
EQGLILLPHLATLGFGIGDGGQIIDTYPYFVIGVVHLVSSAVLAAGGIYHALLGPEVLPE
CCCCEEECCHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC
NNQFPGFFGYDWEDEDKMTTIIGIHLLLLGAGAWLLVAKALFWGGLYDSTVASVRVITEP
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHEEEEEECC
TVNPARIFGYLFGAFGKQGMAAVNNLEDVVGGHIWVGILCIGGGFWHILTQPFAWAKKVL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHEEEEHHHCCCHHHHHCCHHHHHHHHH
FWSGEAYLSYSLAALAYMGLLAAYFVTVNDTVYPTEFYGPLGFSSTSGVISVRTWLATSH
EECCCHHHHHHHHHHHHHHHHHHHHHEECCEECCHHCCCCCCCCCCCCEEEEHHHHHHHH
FALAIVFLSGHIWHALRVRVLEAGLNFEQGVVNYLDTPELGNLQTPINTSDLTLKFLVNL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEC
PIYRPGLSAFARGLEIGMAHGYFLLGPFVKLGPLRNTEFANQAGLLATIGLLLILSICLW
CCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
LYGSAWFQEGKSPQGELPENLKTAKSWSEFNAGWIVGSCGGALFAYLLVTNSSLFF
HHCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231; 3130247 [H]