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The map label for this gene is psbC [H]

Identifier: 17231495

GI number: 17231495

Start: 4822122

End: 4823150

Strand: Reverse

Name: psbC [H]

Synonym: all4003

Alternate gene names: 17231495

Gene position: 4823150-4822122 (Counterclockwise)

Preceding gene: 17231498

Following gene: 17231494

Centisome position: 75.2

GC content: 46.06

Gene sequence:

>1029_bases
ATGACGAGCATCGCTGTGCAAACTCCCAACTCTATCCCTTGGTGGTCTGGTAACGCTCGCTTAACTCATCTTTCAGGGCG
ACTGTTAGGCGCTCATGTGGCTCACGCAGGCTTAATTGTGCTGTGGGCAGGAGCAACAACCTTGTTTGAACTAGCCCGTT
TCCAGACATCACAACCAATGTATGAGCAAGGCTTAATTCTCCTACCCCATTTAGCCGTTCTGGGTTGGGGTGTGGGTAGT
GGTGGTCAGGTTATAGATACCTATCCCTACTTTGTGATTGGAGTATTACACCTGATTAGCTCTGCCTTTCTGGGTCTAGG
CGGAATTTTTCATGCTCTCCTCGGCCCTGCCATTCTGGAAGAGAGATTTTCCTTCTTTGGCTACCGTTGGCAAGATGCTA
ATAAAATGACGACTATCCTGGGCATACATTTAGTTTTGCTAGGTTTAGGAGCAGGCTTACTCGTTGCCAAAGCCGTCTTT
TTTGGAGGCTTATACGACCCCACATTAGGAGAAGTGCGAGTTATTTCTCATCCGACTTGGAACTTTGCAACTATTTTTAG
CTACCTATTTGGTAGTCATAAATATTGGATTGCGGGAGTCGATAATCTCGAAGACTTGGTTGGTGGTCATATTTGGGTCA
GTATTCTCTGCATTGCTGGGGGTCTCTGGCACATTACCACCGAGCCTTCAGCTTTTGTCAAAAGTCTCTTTGTTTGGTCA
GGAGAAGCATATCTTTCCTACAGCTTAGGTGCATTAAGCTTAATGAGTTTGATAGCGGCTTATTTTGTTTCTATCAACAC
ACTGGCTTACCCTGTAGAGTTTTTTGGGCCAGCATTGAGTATTGGTTTTGACCGCTTTCCCTACTTCCAAAGTGCAGATT
TATTATCCTCTCGTGTTTGGTTAGCAAATGCTCACTTTTGGCTGGGCTTTTTCTTCCTGCAAGGGCATCTTTGGCACGCC
CTCCGCGCGGCAGGTTTTGATTTCCGGACCGGAAAAGTTTTACTTCCAACTCGTGGGCAGGTAATTTAA

Upstream 100 bases:

>100_bases
ATAAATCTGCTAAGATATCCTCCAGACTTATTGATATAAATAGTCAATAAGTTTTTTTCCGCATCATAACCATTTCAAAC
CATTCTTAGGAAATGACACG

Downstream 100 bases:

>100_bases
CTATGACTACGGCAACAATCAACCCCCAACAATATGGATGGTGGGCAGGTAACGCTAGGTTTATCAATCTCTCAGGTCGT
CTATTAGGAGCGCACATTGC

Product: hypothetical protein

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTSIAVQTPNSIPWWSGNARLTHLSGRLLGAHVAHAGLIVLWAGATTLFELARFQTSQPMYEQGLILLPHLAVLGWGVGS
GGQVIDTYPYFVIGVLHLISSAFLGLGGIFHALLGPAILEERFSFFGYRWQDANKMTTILGIHLVLLGLGAGLLVAKAVF
FGGLYDPTLGEVRVISHPTWNFATIFSYLFGSHKYWIAGVDNLEDLVGGHIWVSILCIAGGLWHITTEPSAFVKSLFVWS
GEAYLSYSLGALSLMSLIAAYFVSINTLAYPVEFFGPALSIGFDRFPYFQSADLLSSRVWLANAHFWLGFFFLQGHLWHA
LRAAGFDFRTGKVLLPTRGQVI

Sequences:

>Translated_342_residues
MTSIAVQTPNSIPWWSGNARLTHLSGRLLGAHVAHAGLIVLWAGATTLFELARFQTSQPMYEQGLILLPHLAVLGWGVGS
GGQVIDTYPYFVIGVLHLISSAFLGLGGIFHALLGPAILEERFSFFGYRWQDANKMTTILGIHLVLLGLGAGLLVAKAVF
FGGLYDPTLGEVRVISHPTWNFATIFSYLFGSHKYWIAGVDNLEDLVGGHIWVSILCIAGGLWHITTEPSAFVKSLFVWS
GEAYLSYSLGALSLMSLIAAYFVSINTLAYPVEFFGPALSIGFDRFPYFQSADLLSSRVWLANAHFWLGFFFLQGHLWHA
LRAAGFDFRTGKVLLPTRGQVI
>Mature_341_residues
TSIAVQTPNSIPWWSGNARLTHLSGRLLGAHVAHAGLIVLWAGATTLFELARFQTSQPMYEQGLILLPHLAVLGWGVGSG
GQVIDTYPYFVIGVLHLISSAFLGLGGIFHALLGPAILEERFSFFGYRWQDANKMTTILGIHLVLLGLGAGLLVAKAVFF
GGLYDPTLGEVRVISHPTWNFATIFSYLFGSHKYWIAGVDNLEDLVGGHIWVSILCIAGGLWHITTEPSAFVKSLFVWSG
EAYLSYSLGALSLMSLIAAYFVSINTLAYPVEFFGPALSIGFDRFPYFQSADLLSSRVWLANAHFWLGFFFLQGHLWHAL
RAAGFDFRTGKVLLPTRGQVI

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 37511; Mature: 37380

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSIAVQTPNSIPWWSGNARLTHLSGRLLGAHVAHAGLIVLWAGATTLFELARFQTSQPM
CCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCCCH
YEQGLILLPHLAVLGWGVGSGGQVIDTYPYFVIGVLHLISSAFLGLGGIFHALLGPAILE
HHCCCCCCCHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERFSFFGYRWQDANKMTTILGIHLVLLGLGAGLLVAKAVFFGGLYDPTLGEVRVISHPTW
HHHHHCCEEECCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
NFATIFSYLFGSHKYWIAGVDNLEDLVGGHIWVSILCIAGGLWHITTEPSAFVKSLFVWS
HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCC
GEAYLSYSLGALSLMSLIAAYFVSINTLAYPVEFFGPALSIGFDRFPYFQSADLLSSRVW
CCHHEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHCCCCCCCCCCCHHHHHCCHH
LANAHFWLGFFFLQGHLWHALRAAGFDFRTGKVLLPTRGQVI
EECHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC
>Mature Secondary Structure 
TSIAVQTPNSIPWWSGNARLTHLSGRLLGAHVAHAGLIVLWAGATTLFELARFQTSQPM
CEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCCCH
YEQGLILLPHLAVLGWGVGSGGQVIDTYPYFVIGVLHLISSAFLGLGGIFHALLGPAILE
HHCCCCCCCHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERFSFFGYRWQDANKMTTILGIHLVLLGLGAGLLVAKAVFFGGLYDPTLGEVRVISHPTW
HHHHHCCEEECCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
NFATIFSYLFGSHKYWIAGVDNLEDLVGGHIWVSILCIAGGLWHITTEPSAFVKSLFVWS
HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCC
GEAYLSYSLGALSLMSLIAAYFVSINTLAYPVEFFGPALSIGFDRFPYFQSADLLSSRVW
CCHHEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHCCCCCCCCCCCHHHHHCCHH
LANAHFWLGFFFLQGHLWHALRAAGFDFRTGKVLLPTRGQVI
EECHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3138165 [H]