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The map label for this gene is psbL

Identifier: 17231339

GI number: 17231339

Start: 4644432

End: 4644551

Strand: Direct

Name: psbL

Synonym: asr3847

Alternate gene names: 17231339

Gene position: 4644432-4644551 (Clockwise)

Preceding gene: 17231338

Following gene: 17231340

Centisome position: 72.41

GC content: 37.5

Gene sequence:

>120_bases
ATGGAAAGAACGCCCAATCCTAATAATCAACCGGTAGAACTCAACCGGACTTCACTTTACCTGGGACTATTACTAGTTTT
TGTTCTAGGTATTCTATTCTCCAGTTACTTCTTTAACTAA

Upstream 100 bases:

>100_bases
GGATCGCGGTTCACACACTAGCTGTGCCTACCGTATTCTTTTTGGGCGCGATCGCCTCAATGCAGTTTATTCAACGCTAG
TTCGACACTAGGAGTAAATC

Downstream 100 bases:

>100_bases
CTGGAACTCTTGTTGTGAATTTTCATTTATTCAACCTGTGTTGATTTGTTGTTAAGGGAGGAGAAAGCTGTGTCTGCTGG
AAGTGGGAGAATTCCCCTGT

Product: photosystem II reaction center L

Products: NA

Alternate protein names: PSII-L; PSII 5 kDa protein

Number of amino acids: Translated: 39; Mature: 39

Protein sequence:

>39_residues
MERTPNPNNQPVELNRTSLYLGLLLVFVLGILFSSYFFN

Sequences:

>Translated_39_residues
MERTPNPNNQPVELNRTSLYLGLLLVFVLGILFSSYFFN
>Mature_39_residues
MERTPNPNNQPVELNRTSLYLGLLLVFVLGILFSSYFFN

Specific function: Required for PSII activity

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbL family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBL_ANAVT (Q3MC11)

Other databases:

- EMBL:   CP000117
- RefSeq:   YP_322370.1
- ProteinModelPortal:   Q3MC11
- SMR:   Q3MC11
- STRING:   Q3MC11
- GeneID:   3681805
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_1853
- eggNOG:   NOG09652
- HOGENOM:   HBG019016
- ProtClustDB:   PRK00753
- BioCyc:   AVAR240292:AVA_1853-MONOMER
- GO:   GO:0015979
- HAMAP:   MF_01317
- InterPro:   IPR003372

Pfam domain/function: PF02419 PsbL

EC number: NA

Molecular weight: Translated: 4518; Mature: 4518

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x136a5b4c)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERTPNPNNQPVELNRTSLYLGLLLVFVLGILFSSYFFN
CCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure
MERTPNPNNQPVELNRTSLYLGLLLVFVLGILFSSYFFN
CCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA