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The map label for this gene is psbJ [H]

Identifier: 17231340

GI number: 17231340

Start: 4644621

End: 4644743

Strand: Direct

Name: psbJ [H]

Synonym: asr3848

Alternate gene names: 17231340

Gene position: 4644621-4644743 (Clockwise)

Preceding gene: 17231339

Following gene: 17231347

Centisome position: 72.42

GC content: 47.97

Gene sequence:

>123_bases
GTGTCTGCTGGAAGTGGGAGAATTCCCCTGTGGGTCGTCGCTACGATCGCAGGTTTAGGTGTAATTACGGTTGTAGGTAT
CTTCTTCTATGGAGCCTACGCTGGAATCGGTTCTTCAATATAA

Upstream 100 bases:

>100_bases
TATTCTATTCTCCAGTTACTTCTTTAACTAACTGGAACTCTTGTTGTGAATTTTCATTTATTCAACCTGTGTTGATTTGT
TGTTAAGGGAGGAGAAAGCT

Downstream 100 bases:

>100_bases
TTTAGTCTGGGTTTTCTAGCTCTTGTTTAGAAAACAGCATTAAAAAACCGCCTGTCTCCAAAAGATAGGCGGTATTTTGT
TTTGTGAACTTAAAAACCAA

Product: photosystem II reaction center protein J

Products: NA

Alternate protein names: PSII-J [H]

Number of amino acids: Translated: 40; Mature: 39

Protein sequence:

>40_residues
MSAGSGRIPLWVVATIAGLGVITVVGIFFYGAYAGIGSSI

Sequences:

>Translated_40_residues
MSAGSGRIPLWVVATIAGLGVITVVGIFFYGAYAGIGSSI
>Mature_39_residues
SAGSGRIPLWVVATIAGLGVITVVGIFFYGAYAGIGSSI

Specific function: This protein is a component of the reaction center of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbJ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002682 [H]

Pfam domain/function: PF01788 PsbJ [H]

EC number: NA

Molecular weight: Translated: 3973; Mature: 3842

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGSGRIPLWVVATIAGLGVITVVGIFFYGAYAGIGSSI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SAGSGRIPLWVVATIAGLGVITVVGIFFYGAYAGIGSSI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA