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The map label for this gene is psbA [H]

Identifier: 17231234

GI number: 17231234

Start: 4518429

End: 4519511

Strand: Direct

Name: psbA [H]

Synonym: alr3742

Alternate gene names: 17231234

Gene position: 4518429-4519511 (Clockwise)

Preceding gene: 17231231

Following gene: 17231241

Centisome position: 70.45

GC content: 45.43

Gene sequence:

>1083_bases
ATGACAACACTTTTAGAACAGCGTAGTAGCGCTAATTTATGGCATAGATTCGGTAACTGGATTACCAGTACGGAAAATCG
AATGTATGTTGGTTGGTTTGGAGTATTGTTGATTCCCACAGCCTTAACTGCGGCAATTGTCTTTATCCTTGCGTTTATTG
CCGCGCCACCAGTTGACGTGGATGGCATTCGTGAACCAGTATCAGGTTCTTTGCTCTACGGTAATAACATTATTACTGCT
ACTGTAGTGCCAACTTCAGCCGCTATTGGCCTGCATCTATACCCTATATGGGAAGCGGCTTCTTTAGACGAATGGCTTTA
CAATGGCGGCCCTTACCAAATGATTGTCCTGCATTTCCTGATTGCCATCTATGCTTATATGGGTCGGCAATGGGAACTAA
GTTATCGCTTAGGGATGCGTCCGTGGATTCCTGTAGCTTTTTCTGCTCCCGTTGCGGCTGCAACAGCCGTGTTGTTGATT
TATCCCATTGGGCAAGGCAGTTTTTCCGATGGGATGATGCTGGGTATTTCTGGCACATTCAACTTTATGATTGTGTTTTC
ACCGGAACATAATATTCTCATGCACCCATTCCACATGATTGGTGTGGCTGGAGTCTTTGGTGGGGCATTATTCTCGGCAA
TGCACGGTTCCTTGGTGACATCTACATTAGTGCGGGAAACCTCAGAAGTAGAATCAGCCAATACTGGCTATAAGTTTGGT
CAAGAAGAGGAAACCTACAATATCGTAGCTGCACATGGTTACTTTGGGCGGTTAATCTTCCAATATGCCAGCTTTAACAA
CTCCCGTTCTTTGCATTTCTTTCTAGCAGCTTGGCCAGTAATTGGCATCTGGTTTGCGGCTTTGGGTATCAGCACCATGT
CCTTTAACTTGAATGGGTTCAACTTCAATAACTCAATTTTGGATCACCAAGGACGGACAATTGACACTTGGGCAGACCTG
CTCAACAGAGCCAACTTAGGGATTGAAGTGATGCACGAGCGAAATGCTCACAACTTCCCGCTAGATTTAGCGTCTGGTGA
AGTTCAACCAATTGCTTTGACTGCTCCAGCGATCGCTAGTTAG

Upstream 100 bases:

>100_bases
GCTTGACAACTATATTATTATAAAGTTATATATGATTGTAAGACAAGTTACACCCTTGTCGGTTGATATTTCACCATCAC
ATTCGCAATTATCACAACAA

Downstream 100 bases:

>100_bases
TTTCTCCTGTGTATACTGCTTAGTAGATAGCACCCTAATTTTAGGGTGCTTTATTTTTAGATGACTATGTGATTGTTAAA
AAATTGGTGTTTTCTCTTGA

Product: photosystem II protein D1

Products: NA

Alternate protein names: 32 kDa thylakoid membrane protein 1; Photosystem II protein D1 1 [H]

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MTTLLEQRSSANLWHRFGNWITSTENRMYVGWFGVLLIPTALTAAIVFILAFIAAPPVDVDGIREPVSGSLLYGNNIITA
TVVPTSAAIGLHLYPIWEAASLDEWLYNGGPYQMIVLHFLIAIYAYMGRQWELSYRLGMRPWIPVAFSAPVAAATAVLLI
YPIGQGSFSDGMMLGISGTFNFMIVFSPEHNILMHPFHMIGVAGVFGGALFSAMHGSLVTSTLVRETSEVESANTGYKFG
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFAALGISTMSFNLNGFNFNNSILDHQGRTIDTWADL
LNRANLGIEVMHERNAHNFPLDLASGEVQPIALTAPAIAS

Sequences:

>Translated_360_residues
MTTLLEQRSSANLWHRFGNWITSTENRMYVGWFGVLLIPTALTAAIVFILAFIAAPPVDVDGIREPVSGSLLYGNNIITA
TVVPTSAAIGLHLYPIWEAASLDEWLYNGGPYQMIVLHFLIAIYAYMGRQWELSYRLGMRPWIPVAFSAPVAAATAVLLI
YPIGQGSFSDGMMLGISGTFNFMIVFSPEHNILMHPFHMIGVAGVFGGALFSAMHGSLVTSTLVRETSEVESANTGYKFG
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFAALGISTMSFNLNGFNFNNSILDHQGRTIDTWADL
LNRANLGIEVMHERNAHNFPLDLASGEVQPIALTAPAIAS
>Mature_359_residues
TTLLEQRSSANLWHRFGNWITSTENRMYVGWFGVLLIPTALTAAIVFILAFIAAPPVDVDGIREPVSGSLLYGNNIITAT
VVPTSAAIGLHLYPIWEAASLDEWLYNGGPYQMIVLHFLIAIYAYMGRQWELSYRLGMRPWIPVAFSAPVAAATAVLLIY
PIGQGSFSDGMMLGISGTFNFMIVFSPEHNILMHPFHMIGVAGVFGGALFSAMHGSLVTSTLVRETSEVESANTGYKFGQ
EEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFAALGISTMSFNLNGFNFNNSILDHQGRTIDTWADLL
NRANLGIEVMHERNAHNFPLDLASGEVQPIALTAPAIAS

Specific function: This is one of the two reaction center proteins of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000484
- InterPro:   IPR005867 [H]

Pfam domain/function: PF00124 Photo_RC [H]

EC number: NA

Molecular weight: Translated: 39579; Mature: 39448

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLLEQRSSANLWHRFGNWITSTENRMYVGWFGVLLIPTALTAAIVFILAFIAAPPVDV
CCCHHHCCCCCHHHHHHCCCEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
DGIREPVSGSLLYGNNIITATVVPTSAAIGLHLYPIWEAASLDEWLYNGGPYQMIVLHFL
HCCCCCCCCCEEECCCEEEEEEECCCCEEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHH
IAIYAYMGRQWELSYRLGMRPWIPVAFSAPVAAATAVLLIYPIGQGSFSDGMMLGISGTF
HHHHHHHCCEEEEEEECCCCCCCCEEECCCHHHHEEEEEEEECCCCCCCCCEEEEEECCE
NFMIVFSPEHNILMHPFHMIGVAGVFGGALFSAMHGSLVTSTLVRETSEVESANTGYKFG
EEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFAALGISTMSFNLNGF
CCCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHEEEEEEECCC
NFNNSILDHQGRTIDTWADLLNRANLGIEVMHERNAHNFPLDLASGEVQPIALTAPAIAS
CCCCCHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCEECCCCCCEEEEEECCCCCC
>Mature Secondary Structure 
TTLLEQRSSANLWHRFGNWITSTENRMYVGWFGVLLIPTALTAAIVFILAFIAAPPVDV
CCHHHCCCCCHHHHHHCCCEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
DGIREPVSGSLLYGNNIITATVVPTSAAIGLHLYPIWEAASLDEWLYNGGPYQMIVLHFL
HCCCCCCCCCEEECCCEEEEEEECCCCEEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHH
IAIYAYMGRQWELSYRLGMRPWIPVAFSAPVAAATAVLLIYPIGQGSFSDGMMLGISGTF
HHHHHHHCCEEEEEEECCCCCCCCEEECCCHHHHEEEEEEEECCCCCCCCCEEEEEECCE
NFMIVFSPEHNILMHPFHMIGVAGVFGGALFSAMHGSLVTSTLVRETSEVESANTGYKFG
EEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFAALGISTMSFNLNGF
CCCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHEEEEEEECCC
NFNNSILDHQGRTIDTWADLLNRANLGIEVMHERNAHNFPLDLASGEVQPIALTAPAIAS
CCCCCHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCEECCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA