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The map label for this gene is yggB [C]

Identifier: 17231184

GI number: 17231184

Start: 4458604

End: 4459458

Strand: Direct

Name: yggB [C]

Synonym: alr3692

Alternate gene names: 17231184

Gene position: 4458604-4459458 (Clockwise)

Preceding gene: 17231182

Following gene: 17231185

Centisome position: 69.52

GC content: 43.27

Gene sequence:

>855_bases
ATGAATTTCCCACAAATTGGACAGGTTGCTCTTGCACTGTTAACTCAATTTGGGCTGAAAGTTTTAGGGGCGATCGCACT
ATGGATTGTTGCTCAAAAGCTGATTGAGTTTGCCCTCAAGTTAGTGCGTCGTGGTTTACGCACCCAGAATATTGAGCCGA
CGCTCATTAGCTACCTACTGAATATTGTTTCTGTCACATTGAGAATTGTGCTGATTGTGGCAATTCTCGGTTTCTTTGGC
ATTGAAACTACGTCCTTTGCCGCATTGCTAGCAGCCGCAGGTGTGGCTATTGGTGCAGCTTGGGGTGGATTATTGGCGAA
CTTCGCCGCAGGTGCGTTTTTAATTATTTTTCGTCCGTTTAAGGTTGGTGACTTTATTACAGCCGCAGGGATAACCGGTA
CAGTCTCAGAAATCGGCCTGTTCACTACAGATATCACTACTCCTGACAATGTGTTGACAATAGTCGCCAATAACAAAATA
TTCGCTGATAATATCCAGAATTTCTCAGCTAATCCCTTCCGTCGCGTTGACTTGCTAGCGCAACTTCATCATGATGTTGA
TCATAATCAAGCGATCGCTCTTTTAAAGGCCAGAATTAGCCAGATTCCCAATGTGATAGAAAATCCTGCACCAGATGTAG
AAATTCTTACCTTTAATCTAGCAGGCCCTGTATTAGCAGTACGTCCCTATTGCAATAATGATCATTACTGGCAAGTTTAT
TTTGATACAAATAAAGCCATACGCGAAACATTTGGTGAAGCAGGTTATCCCATCCCTGAACAGCGCTATGGTTTTAGTGT
CCCACCCGAAAATGGTACTAGTTCCGTCATTCCCTCATCGGCATTATCTTCTTAA

Upstream 100 bases:

>100_bases
TGACGCTTATTTATGCCAAAGATTAAAAAAAAGTATCCATAGACAGTTTTTCCAGAATTTCTAGTATGTTTTTTGATAAA
CACTAAAATAAGAAGAAATT

Downstream 100 bases:

>100_bases
TATGGTAATTACTGAGTTGTAATTACTTAGGACTTACGGATAAAAACGAAAAATCAAGGGTTTGGAGAAGGGTGTAGGGA
TGTCGATGTTTAAAACCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MNFPQIGQVALALLTQFGLKVLGAIALWIVAQKLIEFALKLVRRGLRTQNIEPTLISYLLNIVSVTLRIVLIVAILGFFG
IETTSFAALLAAAGVAIGAAWGGLLANFAAGAFLIIFRPFKVGDFITAAGITGTVSEIGLFTTDITTPDNVLTIVANNKI
FADNIQNFSANPFRRVDLLAQLHHDVDHNQAIALLKARISQIPNVIENPAPDVEILTFNLAGPVLAVRPYCNNDHYWQVY
FDTNKAIRETFGEAGYPIPEQRYGFSVPPENGTSSVIPSSALSS

Sequences:

>Translated_284_residues
MNFPQIGQVALALLTQFGLKVLGAIALWIVAQKLIEFALKLVRRGLRTQNIEPTLISYLLNIVSVTLRIVLIVAILGFFG
IETTSFAALLAAAGVAIGAAWGGLLANFAAGAFLIIFRPFKVGDFITAAGITGTVSEIGLFTTDITTPDNVLTIVANNKI
FADNIQNFSANPFRRVDLLAQLHHDVDHNQAIALLKARISQIPNVIENPAPDVEILTFNLAGPVLAVRPYCNNDHYWQVY
FDTNKAIRETFGEAGYPIPEQRYGFSVPPENGTSSVIPSSALSS
>Mature_284_residues
MNFPQIGQVALALLTQFGLKVLGAIALWIVAQKLIEFALKLVRRGLRTQNIEPTLISYLLNIVSVTLRIVLIVAILGFFG
IETTSFAALLAAAGVAIGAAWGGLLANFAAGAFLIIFRPFKVGDFITAAGITGTVSEIGLFTTDITTPDNVLTIVANNKI
FADNIQNFSANPFRRVDLLAQLHHDVDHNQAIALLKARISQIPNVIENPAPDVEILTFNLAGPVLAVRPYCNNDHYWQVY
FDTNKAIRETFGEAGYPIPEQRYGFSVPPENGTSSVIPSSALSS

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=262, Percent_Identity=30.1526717557252, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI2367355, Length=211, Percent_Identity=25.5924170616114, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787591, Length=227, Percent_Identity=26.431718061674, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 30706; Mature: 30706

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFPQIGQVALALLTQFGLKVLGAIALWIVAQKLIEFALKLVRRGLRTQNIEPTLISYLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
NIVSVTLRIVLIVAILGFFGIETTSFAALLAAAGVAIGAAWGGLLANFAAGAFLIIFRPF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC
KVGDFITAAGITGTVSEIGLFTTDITTPDNVLTIVANNKIFADNIQNFSANPFRRVDLLA
CCCCHHHHCCCCCCHHHHCEEEECCCCCCCEEEEEECCEEEECCCCCCCCCHHHHHHHHH
QLHHDVDHNQAIALLKARISQIPNVIENPAPDVEILTFNLAGPVLAVRPYCNNDHYWQVY
HHHHCCCCHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEECCCCEEEEECCCCCCCEEEEE
FDTNKAIRETFGEAGYPIPEQRYGFSVPPENGTSSVIPSSALSS
ECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
>Mature Secondary Structure
MNFPQIGQVALALLTQFGLKVLGAIALWIVAQKLIEFALKLVRRGLRTQNIEPTLISYLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
NIVSVTLRIVLIVAILGFFGIETTSFAALLAAAGVAIGAAWGGLLANFAAGAFLIIFRPF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC
KVGDFITAAGITGTVSEIGLFTTDITTPDNVLTIVANNKIFADNIQNFSANPFRRVDLLA
CCCCHHHHCCCCCCHHHHCEEEECCCCCCCEEEEEECCEEEECCCCCCCCCHHHHHHHHH
QLHHDVDHNQAIALLKARISQIPNVIENPAPDVEILTFNLAGPVLAVRPYCNNDHYWQVY
HHHHCCCCHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEECCCCEEEEECCCCCCCEEEEE
FDTNKAIRETFGEAGYPIPEQRYGFSVPPENGTSSVIPSSALSS
ECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]