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The map label for this gene is yggB [C]

Identifier: 17231185

GI number: 17231185

Start: 4459879

End: 4460739

Strand: Direct

Name: yggB [C]

Synonym: alr3693

Alternate gene names: 17231185

Gene position: 4459879-4460739 (Clockwise)

Preceding gene: 17231184

Following gene: 17231186

Centisome position: 69.54

GC content: 40.19

Gene sequence:

>861_bases
ATGAATGTAGCTGAGATTAGTCAAGTTGCTCTAGCTCTTTTAACACAGTTTGGACTGAGAGTTTTAGGAGCGATCGCTCT
TTGGATTATTGCTCAATTGTTGATTAATTTTGGCTTAAAGTTACTGCGCCGTGCTTTTCGTAGTAAACACGTCGAACCTA
CGCTGATTAACTATATTGTAAATATAGTAGATGTAATCCTCAAAATTGTTTTAATTGTTGCAATTCTCGGCTTTTTTGGC
ATAGAAACTACTTCCTTTGCAGCATTACTAGCGGCGGCTGGTATAGCTATCGGTGCGGCTTGGAGTGGGCTTTTGGCAAA
CTTCGCGGCTGGCGCATTTTTAGTTATCTTTCGCCCATTTGCGGTTGGCGACACCATCAAAGCAGCAGGTGTTACCGGGA
AAGTAGAAGAAATCGGACTGTTCACAACCACCATCAATACATCTGATAACGTCAAGACTATTATTGGTAATAATAAAATA
TTTGCTGATAATATCCAGAATTTTTCTGCCAACCCTTACCGCCGTGTTGACCTAGAAGCGCAACTGCATCATGAAGTTGA
TCATCAAGATGCAATTAGGAGATTAAAACAGAGAATTAGCCAAATACCTCATGTGTTAAATAATCCTGCACCAGATGTAG
AAATTTTGGAATTTAACTTATTAGGAACAGTATTAGCAGTACGTCCTTATTGTCATCATGAGCATTACTGGCAAGTGTAT
TTTGACACGAATAAAGCCATACGCGAAACTTTTGGTGAAGCCGGTTATCCAATTCCCGAACAACGTTATGCCTTTACTGG
ACAATCACCCGATGGAACATCAGCTAATGTTGTACAACGGACATCTTTAGGAAGAGGCTAG

Upstream 100 bases:

>100_bases
TCACTATTATGGCAAGCTGCAAAAATTAAATCAATTTCCGTCAGCACCTAGCGGTAGATTACTGTTCTTTTCAAAAAGCA
TAAAAAATAGAGAAATTCTT

Downstream 100 bases:

>100_bases
AACTTAGATATGCAATTAGGACTTACGCACACAGGTTATCTGTTGAGATCGGGTGTAAGGGTTTCAAACATTTATACCCC
TACAACCTTTTCCAAAACCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MNVAEISQVALALLTQFGLRVLGAIALWIIAQLLINFGLKLLRRAFRSKHVEPTLINYIVNIVDVILKIVLIVAILGFFG
IETTSFAALLAAAGIAIGAAWSGLLANFAAGAFLVIFRPFAVGDTIKAAGVTGKVEEIGLFTTTINTSDNVKTIIGNNKI
FADNIQNFSANPYRRVDLEAQLHHEVDHQDAIRRLKQRISQIPHVLNNPAPDVEILEFNLLGTVLAVRPYCHHEHYWQVY
FDTNKAIRETFGEAGYPIPEQRYAFTGQSPDGTSANVVQRTSLGRG

Sequences:

>Translated_286_residues
MNVAEISQVALALLTQFGLRVLGAIALWIIAQLLINFGLKLLRRAFRSKHVEPTLINYIVNIVDVILKIVLIVAILGFFG
IETTSFAALLAAAGIAIGAAWSGLLANFAAGAFLVIFRPFAVGDTIKAAGVTGKVEEIGLFTTTINTSDNVKTIIGNNKI
FADNIQNFSANPYRRVDLEAQLHHEVDHQDAIRRLKQRISQIPHVLNNPAPDVEILEFNLLGTVLAVRPYCHHEHYWQVY
FDTNKAIRETFGEAGYPIPEQRYAFTGQSPDGTSANVVQRTSLGRG
>Mature_286_residues
MNVAEISQVALALLTQFGLRVLGAIALWIIAQLLINFGLKLLRRAFRSKHVEPTLINYIVNIVDVILKIVLIVAILGFFG
IETTSFAALLAAAGIAIGAAWSGLLANFAAGAFLVIFRPFAVGDTIKAAGVTGKVEEIGLFTTTINTSDNVKTIIGNNKI
FADNIQNFSANPYRRVDLEAQLHHEVDHQDAIRRLKQRISQIPHVLNNPAPDVEILEFNLLGTVLAVRPYCHHEHYWQVY
FDTNKAIRETFGEAGYPIPEQRYAFTGQSPDGTSANVVQRTSLGRG

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=262, Percent_Identity=29.7709923664122, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI2367355, Length=222, Percent_Identity=24.7747747747748, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 31417; Mature: 31417

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVAEISQVALALLTQFGLRVLGAIALWIIAQLLINFGLKLLRRAFRSKHVEPTLINYIV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
NIVDVILKIVLIVAILGFFGIETTSFAALLAAAGIAIGAAWSGLLANFAAGAFLVIFRPF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVGDTIKAAGVTGKVEEIGLFTTTINTSDNVKTIIGNNKIFADNIQNFSANPYRRVDLEA
HCCCCHHHCCCCCCHHHHEEEEEEECCCCCEEEEECCCEEEECCCCCCCCCCCEEECHHH
QLHHEVDHQDAIRRLKQRISQIPHVLNNPAPDVEILEFNLLGTVLAVRPYCHHEHYWQVY
HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEE
FDTNKAIRETFGEAGYPIPEQRYAFTGQSPDGTSANVVQRTSLGRG
ECCCHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MNVAEISQVALALLTQFGLRVLGAIALWIIAQLLINFGLKLLRRAFRSKHVEPTLINYIV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
NIVDVILKIVLIVAILGFFGIETTSFAALLAAAGIAIGAAWSGLLANFAAGAFLVIFRPF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVGDTIKAAGVTGKVEEIGLFTTTINTSDNVKTIIGNNKIFADNIQNFSANPYRRVDLEA
HCCCCHHHCCCCCCHHHHEEEEEEECCCCCEEEEECCCEEEECCCCCCCCCCCEEECHHH
QLHHEVDHQDAIRRLKQRISQIPHVLNNPAPDVEILEFNLLGTVLAVRPYCHHEHYWQVY
HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEE
FDTNKAIRETFGEAGYPIPEQRYAFTGQSPDGTSANVVQRTSLGRG
ECCCHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]