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The map label for this gene is 17231170

Identifier: 17231170

GI number: 17231170

Start: 4434586

End: 4436355

Strand: Reverse

Name: 17231170

Synonym: all3678

Alternate gene names: NA

Gene position: 4436355-4434586 (Counterclockwise)

Preceding gene: 17231171

Following gene: 17231169

Centisome position: 69.17

GC content: 45.99

Gene sequence:

>1770_bases
ATGGTTAAAAACGAAACTAATGCTGGCCTAAAAATTATTCCCTTAGGCGGTTTACATGAAATTGGTAAAAACACCTGCGT
TTTTGAATACGATGATGAAATCATCCTCTTAGATGCAGGATTGGCTTTCCCCACAGAGGCGATGCACGGAGTAAATATCG
TCCTGCCAGATATGACTTATCTACGGGAAAATCGCCACAAAATCAAAGGTATGGTTGTTACCCACGGCCATGAAGATCAT
ATTGGTGGGATTGCTTTTCACCTCAAACAATTTGACATTCCAGTAATTTATGGGCCTAGACTAGCAATGGCAATGCTAGA
GGGTAAATTAGAAGAAGCTGGAGTACGCGATCGCACAGAATTAAGAAAAGTTTTACCTCGTGATGTTGTACGCATTGGCA
AATCCTTCTTCGTCGAGTACATCCGCAACACCCACTCCATTGCTGATAGCTTCACCCTTGCCATTCACACTCCTTTAGGT
GTGGTCATTCACACCGGTGACTTCAAATTTGACCACACCCCAGTTGATGGTGAAAAATTTGACTTGCAGCGCCTTGCAGA
ACACGGTGAAAAAGGCGTACTTTGTCTGTTGAGCGATTCCACTAACTCCGAAGTTCCAGGATTCACCCCTTCAGAAGCAT
CAGTTTTTCCCAACCTAGATAGAGTTTTTAGTCAAGCGGAAGGACGGCTATTCGTCACCACCTTTGCTTCCAGCGTCCAT
CGCATCAACATGATTCTGCAACTGGCGAAAAAGCATAACCGCGTCGTCACAGTCGTTGGCCGTTCCATGCTGAACTTGAT
TGCCCACGCTCGTAATTTGGGTTACATCAAGTGTGAAGATAATCTGTTGCAGCCCTTGCATATGGTACGCAATCTACCAG
ATGATAATGTTTTGGTTCTCACCACGGGTTCTCAAGGTGAAACAATGGCAGCCATGACCAGGATTGCCAACAAAGAACAC
CCCCATATTAAAATTCGCCAAGGTGATACTGTTGTCTTCTCTGCTAACCCAATTCCAGGGAACACAATTGCTGTAGTCAA
CACCATCGACAAATTGATGCAGCAAGGGGCAAAAGTAGTTTATGGAAGAGACCAAGGAATTCACGTTTCGGGTCACGGCT
GTCAGGAAGACCAAAAGCTGATGATTTCCTTAACTCGACCTAAGTTCTTTGTACCAGTCCACGGCGAGCATCGGATGTTG
GTGAAACATTCCCAAACCGCCCAGAAGACAGGCATTCCCGCCGAGAATATGGTAATTATTCAGAATGGGGATATCATTGA
ACTCACTGAAGACTCAATTCGTGTCGCGGGGAAAGTTCAATCTGGTATCGAGTTGGTGGATACTACAAGCTCTGGAATGG
TCAGCGCCAAAGTACTGCAAGAACGTCAACGCATGGCAGAGGAAGGCCTTGTAACTATTGCAGCTGCTATTGATTGGCAA
GGTAAATTGTTGGCTAAACCAGAGATTCACCTGCGTGGTGTTGTTACTAGTGTAGAGCGATCGCTGCTACAAAAATGGGT
ACAACAGCGTATTGAAGAAATTTTGGGCGTGCGCTGGTCAGAGTTTACGACTTCTGAAGGTGAACAACCTGAGATTGATT
GGGGTGGTTTGCAAGGAACTTTAGAGCGCGAGTTGCAACGTTCTATTCGTCGTGAGTTGCAATGTCAGCCATCAGTGACC
TTGCTGATGCAAATTCCTGATGAGCCACCTGTGAAGGTGGCTGATGGTAGAAGGAGGCGGACTCGGACGGCTGCTCAAGT
AGCTTCTTAG

Upstream 100 bases:

>100_bases
TAGCTGCTTGTAAAAAGCAGGCTCATGTTGTCATTCCTAAAAGAAGCTGAATTTTCAAATTTACTAAGTCTAAAACAACA
AACAACAATCTCAGGAGAAA

Downstream 100 bases:

>100_bases
AGAGTATTCAGGGGTAAAACTCACATAGAGGCGCAAAGATGCTCAGAAAACCTGTGCGTCTTTGCGCTTTGGTGTGCGAT
ATTATGACCCAAGACAATTA

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 589; Mature: 589

Protein sequence:

>589_residues
MVKNETNAGLKIIPLGGLHEIGKNTCVFEYDDEIILLDAGLAFPTEAMHGVNIVLPDMTYLRENRHKIKGMVVTHGHEDH
IGGIAFHLKQFDIPVIYGPRLAMAMLEGKLEEAGVRDRTELRKVLPRDVVRIGKSFFVEYIRNTHSIADSFTLAIHTPLG
VVIHTGDFKFDHTPVDGEKFDLQRLAEHGEKGVLCLLSDSTNSEVPGFTPSEASVFPNLDRVFSQAEGRLFVTTFASSVH
RINMILQLAKKHNRVVTVVGRSMLNLIAHARNLGYIKCEDNLLQPLHMVRNLPDDNVLVLTTGSQGETMAAMTRIANKEH
PHIKIRQGDTVVFSANPIPGNTIAVVNTIDKLMQQGAKVVYGRDQGIHVSGHGCQEDQKLMISLTRPKFFVPVHGEHRML
VKHSQTAQKTGIPAENMVIIQNGDIIELTEDSIRVAGKVQSGIELVDTTSSGMVSAKVLQERQRMAEEGLVTIAAAIDWQ
GKLLAKPEIHLRGVVTSVERSLLQKWVQQRIEEILGVRWSEFTTSEGEQPEIDWGGLQGTLERELQRSIRRELQCQPSVT
LLMQIPDEPPVKVADGRRRRTRTAAQVAS

Sequences:

>Translated_589_residues
MVKNETNAGLKIIPLGGLHEIGKNTCVFEYDDEIILLDAGLAFPTEAMHGVNIVLPDMTYLRENRHKIKGMVVTHGHEDH
IGGIAFHLKQFDIPVIYGPRLAMAMLEGKLEEAGVRDRTELRKVLPRDVVRIGKSFFVEYIRNTHSIADSFTLAIHTPLG
VVIHTGDFKFDHTPVDGEKFDLQRLAEHGEKGVLCLLSDSTNSEVPGFTPSEASVFPNLDRVFSQAEGRLFVTTFASSVH
RINMILQLAKKHNRVVTVVGRSMLNLIAHARNLGYIKCEDNLLQPLHMVRNLPDDNVLVLTTGSQGETMAAMTRIANKEH
PHIKIRQGDTVVFSANPIPGNTIAVVNTIDKLMQQGAKVVYGRDQGIHVSGHGCQEDQKLMISLTRPKFFVPVHGEHRML
VKHSQTAQKTGIPAENMVIIQNGDIIELTEDSIRVAGKVQSGIELVDTTSSGMVSAKVLQERQRMAEEGLVTIAAAIDWQ
GKLLAKPEIHLRGVVTSVERSLLQKWVQQRIEEILGVRWSEFTTSEGEQPEIDWGGLQGTLERELQRSIRRELQCQPSVT
LLMQIPDEPPVKVADGRRRRTRTAAQVAS
>Mature_589_residues
MVKNETNAGLKIIPLGGLHEIGKNTCVFEYDDEIILLDAGLAFPTEAMHGVNIVLPDMTYLRENRHKIKGMVVTHGHEDH
IGGIAFHLKQFDIPVIYGPRLAMAMLEGKLEEAGVRDRTELRKVLPRDVVRIGKSFFVEYIRNTHSIADSFTLAIHTPLG
VVIHTGDFKFDHTPVDGEKFDLQRLAEHGEKGVLCLLSDSTNSEVPGFTPSEASVFPNLDRVFSQAEGRLFVTTFASSVH
RINMILQLAKKHNRVVTVVGRSMLNLIAHARNLGYIKCEDNLLQPLHMVRNLPDDNVLVLTTGSQGETMAAMTRIANKEH
PHIKIRQGDTVVFSANPIPGNTIAVVNTIDKLMQQGAKVVYGRDQGIHVSGHGCQEDQKLMISLTRPKFFVPVHGEHRML
VKHSQTAQKTGIPAENMVIIQNGDIIELTEDSIRVAGKVQSGIELVDTTSSGMVSAKVLQERQRMAEEGLVTIAAAIDWQ
GKLLAKPEIHLRGVVTSVERSLLQKWVQQRIEEILGVRWSEFTTSEGEQPEIDWGGLQGTLERELQRSIRRELQCQPSVT
LLMQIPDEPPVKVADGRRRRTRTAAQVAS

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 65496; Mature: 65496

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKNETNAGLKIIPLGGLHEIGKNTCVFEYDDEIILLDAGLAFPTEAMHGVNIVLPDMTY
CCCCCCCCCEEEEECCCHHHHCCCCEEEEECCCEEEEECCCCCCCHHHCCCEEEECCHHH
LRENRHKIKGMVVTHGHEDHIGGIAFHLKQFDIPVIYGPRLAMAMLEGKLEEAGVRDRTE
HHCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEECCHHHHHHHHCCHHHCCCCCHHH
LRKVLPRDVVRIGKSFFVEYIRNTHSIADSFTLAIHTPLGVVIHTGDFKFDHTPVDGEKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCEECCCCCCCCHH
DLQRLAEHGEKGVLCLLSDSTNSEVPGFTPSEASVFPNLDRVFSQAEGRLFVTTFASSVH
HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHH
RINMILQLAKKHNRVVTVVGRSMLNLIAHARNLGYIKCEDNLLQPLHMVRNLPDDNVLVL
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCEEEE
TTGSQGETMAAMTRIANKEHPHIKIRQGDTVVFSANPIPGNTIAVVNTIDKLMQQGAKVV
EECCCCCHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCCEEHHHHHHHHHHCCCEEE
YGRDQGIHVSGHGCQEDQKLMISLTRPKFFVPVHGEHRMLVKHSQTAQKTGIPAENMVII
EECCCCEEECCCCCCCCCEEEEEEECCEEEEEECCCCEEEEECCCHHHHCCCCCCCEEEE
QNGDIIELTEDSIRVAGKVQSGIELVDTTSSGMVSAKVLQERQRMAEEGLVTIAAAIDWQ
ECCCEEEECCCCCEEEEHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCC
GKLLAKPEIHLRGVVTSVERSLLQKWVQQRIEEILGVRWSEFTTSEGEQPEIDWGGLQGT
CCEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
LERELQRSIRRELQCQPSVTLLMQIPDEPPVKVADGRRRRTRTAAQVAS
HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MVKNETNAGLKIIPLGGLHEIGKNTCVFEYDDEIILLDAGLAFPTEAMHGVNIVLPDMTY
CCCCCCCCCEEEEECCCHHHHCCCCEEEEECCCEEEEECCCCCCCHHHCCCEEEECCHHH
LRENRHKIKGMVVTHGHEDHIGGIAFHLKQFDIPVIYGPRLAMAMLEGKLEEAGVRDRTE
HHCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEECCHHHHHHHHCCHHHCCCCCHHH
LRKVLPRDVVRIGKSFFVEYIRNTHSIADSFTLAIHTPLGVVIHTGDFKFDHTPVDGEKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCEECCCCCCCCHH
DLQRLAEHGEKGVLCLLSDSTNSEVPGFTPSEASVFPNLDRVFSQAEGRLFVTTFASSVH
HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHH
RINMILQLAKKHNRVVTVVGRSMLNLIAHARNLGYIKCEDNLLQPLHMVRNLPDDNVLVL
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCEEEE
TTGSQGETMAAMTRIANKEHPHIKIRQGDTVVFSANPIPGNTIAVVNTIDKLMQQGAKVV
EECCCCCHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCCEEHHHHHHHHHHCCCEEE
YGRDQGIHVSGHGCQEDQKLMISLTRPKFFVPVHGEHRMLVKHSQTAQKTGIPAENMVII
EECCCCEEECCCCCCCCCEEEEEEECCEEEEEECCCCEEEEECCCHHHHCCCCCCCEEEE
QNGDIIELTEDSIRVAGKVQSGIELVDTTSSGMVSAKVLQERQRMAEEGLVTIAAAIDWQ
ECCCEEEECCCCCEEEEHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCC
GKLLAKPEIHLRGVVTSVERSLLQKWVQQRIEEILGVRWSEFTTSEGEQPEIDWGGLQGT
CCEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
LERELQRSIRRELQCQPSVTLLMQIPDEPPVKVADGRRRRTRTAAQVAS
HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]