Click here to switch to the map view.

The map label for this gene is 17230848

Identifier: 17230848

GI number: 17230848

Start: 4061957

End: 4062496

Strand: Direct

Name: 17230848

Synonym: alr3356

Alternate gene names: NA

Gene position: 4061957-4062496 (Clockwise)

Preceding gene: 17230847

Following gene: 17230849

Centisome position: 63.33

GC content: 43.89

Gene sequence:

>540_bases
GTGCAAATTCATTCTCACGCAGAATTTGATCCTAGTTCAAATAAACCGACTGAACAGGGTTTACAAAAAGTTCTCCAGCG
TCTTGTCCAGACAATGCAGAGAGACGCATTAGTTAGACAAACGACAAATCAACTCAGAGAATCGCTGCAAGTTGATCGTG
TGGTTTTGTATTATTTTTACTGGCAGTGGCACGGACAAGTTACCTTTGAAGCCTTGAGTTCCGAAGAATTTTCGATATTA
GGGTCAACTGGGGCAGATGAATGTTTTAATGATGAGTATGCAGCACTGTATTTAGCTGGACGGACAAAAGCGATCGCCGA
CATTGAATCAGAACCCATCACCACTTGTCATCGGGACTTTCTCCGCACTCTACAAGTCCGCGCCAACCTAGTTGTACCAG
TTTTAGTTCCCAAAGGATTATGGGGCTTACTAGTCGCGCATCACTGCCAAGGAACCCATGATTGGAAAGAATCAGACATA
GAATTGATGCAGGCAGGAGCTAAAACCCTCGCAACATCGCCTTATATTTTGGAAAGTTGA

Upstream 100 bases:

>100_bases
ATATTTTTTACTGATTATTCCTAACAGGATTGTTCAAATAAAGTCTGATAAATTACTATATAGATGCTGACAAAGTTGAC
TGATTCATCATTGTAAAACT

Downstream 100 bases:

>100_bases
ACTACTTTCTACTCCCTGTCTTAATTTAACTTGTCTATGAATTCTCATTCAGCGCTACAAAAAGCTATAGCTCATCGCAT
TGCTACCAGTCCCAAAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MQIHSHAEFDPSSNKPTEQGLQKVLQRLVQTMQRDALVRQTTNQLRESLQVDRVVLYYFYWQWHGQVTFEALSSEEFSIL
GSTGADECFNDEYAALYLAGRTKAIADIESEPITTCHRDFLRTLQVRANLVVPVLVPKGLWGLLVAHHCQGTHDWKESDI
ELMQAGAKTLATSPYILES

Sequences:

>Translated_179_residues
MQIHSHAEFDPSSNKPTEQGLQKVLQRLVQTMQRDALVRQTTNQLRESLQVDRVVLYYFYWQWHGQVTFEALSSEEFSIL
GSTGADECFNDEYAALYLAGRTKAIADIESEPITTCHRDFLRTLQVRANLVVPVLVPKGLWGLLVAHHCQGTHDWKESDI
ELMQAGAKTLATSPYILES
>Mature_179_residues
MQIHSHAEFDPSSNKPTEQGLQKVLQRLVQTMQRDALVRQTTNQLRESLQVDRVVLYYFYWQWHGQVTFEALSSEEFSIL
GSTGADECFNDEYAALYLAGRTKAIADIESEPITTCHRDFLRTLQVRANLVVPVLVPKGLWGLLVAHHCQGTHDWKESDI
ELMQAGAKTLATSPYILES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003018
- InterPro:   IPR016132 [H]

Pfam domain/function: PF01590 GAF [H]

EC number: NA

Molecular weight: Translated: 20335; Mature: 20335

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIHSHAEFDPSSNKPTEQGLQKVLQRLVQTMQRDALVRQTTNQLRESLQVDRVVLYYFY
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
WQWHGQVTFEALSSEEFSILGSTGADECFNDEYAALYLAGRTKAIADIESEPITTCHRDF
EEECCEEEEEECCCCCEEEEECCCCCHHCCCCEEEEEEECCCHHHHCCCCCCCHHHHHHH
LRTLQVRANLVVPVLVPKGLWGLLVAHHCQGTHDWKESDIELMQAGAKTLATSPYILES
HHHHHHHHCEEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEECC
>Mature Secondary Structure
MQIHSHAEFDPSSNKPTEQGLQKVLQRLVQTMQRDALVRQTTNQLRESLQVDRVVLYYFY
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
WQWHGQVTFEALSSEEFSILGSTGADECFNDEYAALYLAGRTKAIADIESEPITTCHRDF
EEECCEEEEEECCCCCEEEEECCCCCHHCCCCEEEEEEECCCHHHHCCCCCCCHHHHHHH
LRTLQVRANLVVPVLVPKGLWGLLVAHHCQGTHDWKESDIELMQAGAKTLATSPYILES
HHHHHHHHCEEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1554697 [H]