Click here to switch to the map view.

The map label for this gene is 17230730

Identifier: 17230730

GI number: 17230730

Start: 3910902

End: 3911306

Strand: Direct

Name: 17230730

Synonym: alr3238

Alternate gene names: NA

Gene position: 3910902-3911306 (Clockwise)

Preceding gene: 17230727

Following gene: 17230732

Centisome position: 60.98

GC content: 37.28

Gene sequence:

>405_bases
ATGGGAAACCCAACTATTGGACAATTAGAAAGAGAGATTTCACAACGGGTCAGTTCTCTGTATAATGAGAAGCTGGGACA
GAGACCCAGCCAAATTATTTGTCACTTTTTTGATTCTGAATTGGTGATTTCTTTAGAAAATTCAGTTACCCAAACTGAGC
GTACACTGTTGGATGGAGGTCATGAAATTTTAGTCGAACAAATAAGAATATTGCTAGATAAAATAATTAAAAGAGAACTA
CAAATCTTGATCGAGAAAGTGATTGGTAAGCCTATTCTCGATTTGATGAGCAATACTAATTTAGCCACAGGTCGTACAGG
CATCATCGTGATTTTAGACGAGTTACCCACAGTACGCAATCCAGAATCTATTCCGAAAGTAAACTGGAAGAATGTCGCCG
ATTAA

Upstream 100 bases:

>100_bases
GCTTGCAATGTATACACAGGAAGTATTTTCTATTTACCTATAACTTGAATACTTATTGATTGCCTCAGTCACAAAACTTG
TCGATCACACTTAGAAAATA

Downstream 100 bases:

>100_bases
CATAATGAGTAATCAAAGTATTTAACTGAATAAAATTATATGGTTTGGTAATGTAGTCATCAGCACCTGTAAGAAAAAGG
TGGTCTTGATTCTGCACCAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MGNPTIGQLEREISQRVSSLYNEKLGQRPSQIICHFFDSELVISLENSVTQTERTLLDGGHEILVEQIRILLDKIIKREL
QILIEKVIGKPILDLMSNTNLATGRTGIIVILDELPTVRNPESIPKVNWKNVAD

Sequences:

>Translated_134_residues
MGNPTIGQLEREISQRVSSLYNEKLGQRPSQIICHFFDSELVISLENSVTQTERTLLDGGHEILVEQIRILLDKIIKREL
QILIEKVIGKPILDLMSNTNLATGRTGIIVILDELPTVRNPESIPKVNWKNVAD
>Mature_133_residues
GNPTIGQLEREISQRVSSLYNEKLGQRPSQIICHFFDSELVISLENSVTQTERTLLDGGHEILVEQIRILLDKIIKRELQ
ILIEKVIGKPILDLMSNTNLATGRTGIIVILDELPTVRNPESIPKVNWKNVAD

Specific function: Unknown

COG id: COG5609

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15125; Mature: 14994

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNPTIGQLEREISQRVSSLYNEKLGQRPSQIICHFFDSELVISLENSVTQTERTLLDGG
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHCH
HEILVEQIRILLDKIIKRELQILIEKVIGKPILDLMSNTNLATGRTGIIVILDELPTVRN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCC
PESIPKVNWKNVAD
CCCCCCCCCCCCCC
>Mature Secondary Structure 
GNPTIGQLEREISQRVSSLYNEKLGQRPSQIICHFFDSELVISLENSVTQTERTLLDGG
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHCH
HEILVEQIRILLDKIIKRELQILIEKVIGKPILDLMSNTNLATGRTGIIVILDELPTVRN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCC
PESIPKVNWKNVAD
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA