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The map label for this gene is 17230713

Identifier: 17230713

GI number: 17230713

Start: 3888469

End: 3888987

Strand: Reverse

Name: 17230713

Synonym: all3221

Alternate gene names: NA

Gene position: 3888987-3888469 (Counterclockwise)

Preceding gene: 17230715

Following gene: 17230712

Centisome position: 60.63

GC content: 44.7

Gene sequence:

>519_bases
GTGAGTGAGGTGAGTTTAGTAACCTCAGTAAAATTCAATACACAGGAACCGGAGATTACCATGACTTACGCTACCGATGA
ACGCACCCAAAGAGCCATAGAACAGTTTCGTGGCTTTGATATTGACACCCAACTAGCTCTACTGTGGTATGGCTATCTTG
ACCTCAAGGAACAGTTAGATTCAGAAACAAATCAACCTTCCGTACAAGATACAGCTGCGGCTTTATACGATCAGATTCGA
GCCTTACCACAAGAACAACAATTACAAGCCCAACGGGATATCGCTAGTGGTGGAAACACAGATATTAGCCGCACCTACAA
TGCCTTGCACTCTAGCCCCAAAATAGAATTGTGGCTCAGACTCGCACGCGGTATGGAAAGCGGTGAGATTATTCAAGTCC
CATCAGACTATGAACTACCCCTAGAAACCAAAAGCTTTGTTGATACAGTTAAAGCCTTAGACTTCTCACAACGCATCGAT
TTTACCCGCAGCATCGTTTTAGAGTGGGGCGCAAAATAG

Upstream 100 bases:

>100_bases
TTTCTGGACTGCAAATGTCATATTTACATCTGTCATAAGCTAAGGTACTCATTTCTACCTTCAGTAGGGTTAATCTCCCT
GGCTCAATTTATAGGATTTT

Downstream 100 bases:

>100_bases
CATAACCGCAAGGGGAACCCAGTTCCCCATTTTTTAACTTCAATACTTCTCCCCCTGCTCCCCTCTGCTTCTTCCCAATC
CCCATTTTGTAAAGGCATAT

Product: hypothetical protein

Products: NA

Alternate protein names: OCP; RCP [H]

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSEVSLVTSVKFNTQEPEITMTYATDERTQRAIEQFRGFDIDTQLALLWYGYLDLKEQLDSETNQPSVQDTAAALYDQIR
ALPQEQQLQAQRDIASGGNTDISRTYNALHSSPKIELWLRLARGMESGEIIQVPSDYELPLETKSFVDTVKALDFSQRID
FTRSIVLEWGAK

Sequences:

>Translated_172_residues
MSEVSLVTSVKFNTQEPEITMTYATDERTQRAIEQFRGFDIDTQLALLWYGYLDLKEQLDSETNQPSVQDTAAALYDQIR
ALPQEQQLQAQRDIASGGNTDISRTYNALHSSPKIELWLRLARGMESGEIIQVPSDYELPLETKSFVDTVKALDFSQRID
FTRSIVLEWGAK
>Mature_171_residues
SEVSLVTSVKFNTQEPEITMTYATDERTQRAIEQFRGFDIDTQLALLWYGYLDLKEQLDSETNQPSVQDTAAALYDQIRA
LPQEQQLQAQRDIASGGNTDISRTYNALHSSPKIELWLRLARGMESGEIIQVPSDYELPLETKSFVDTVKALDFSQRIDF
TRSIVLEWGAK

Specific function: Acts as a photo-protectant. Essential for inhibiting white and blue-green light non-photochemical quenching (NPQ). Binding carotenoids improves OCP's intrinsic photoprotectant activity by broadening its absorption spectrum and facilitating the dissipation

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane. Note=Associated with the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002075
- InterPro:   IPR015233 [H]

Pfam domain/function: PF09150 Carot_N; PF02136 NTF2 [H]

EC number: NA

Molecular weight: Translated: 19598; Mature: 19467

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEVSLVTSVKFNTQEPEITMTYATDERTQRAIEQFRGFDIDTQLALLWYGYLDLKEQLD
CCCCEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
SETNQPSVQDTAAALYDQIRALPQEQQLQAQRDIASGGNTDISRTYNALHSSPKIELWLR
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHH
LARGMESGEIIQVPSDYELPLETKSFVDTVKALDFSQRIDFTRSIVLEWGAK
HHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SEVSLVTSVKFNTQEPEITMTYATDERTQRAIEQFRGFDIDTQLALLWYGYLDLKEQLD
CCCEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
SETNQPSVQDTAAALYDQIRALPQEQQLQAQRDIASGGNTDISRTYNALHSSPKIELWLR
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHH
LARGMESGEIIQVPSDYELPLETKSFVDTVKALDFSQRIDFTRSIVLEWGAK
HHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]