Click here to switch to the map view.

The map label for this gene is 17230712

Identifier: 17230712

GI number: 17230712

Start: 3886139

End: 3887806

Strand: Reverse

Name: 17230712

Synonym: all3220

Alternate gene names: NA

Gene position: 3887806-3886139 (Counterclockwise)

Preceding gene: 17230713

Following gene: 17230704

Centisome position: 60.62

GC content: 47.66

Gene sequence:

>1668_bases
ATGAGGAATAATTTGTCCGCATATTCCAATATTGAGACAGGGGAAGCAGCAACTGAACTAGAATGTTTTCCCTACAGCGT
TCAGCACAATGATGAAGGTGTATGTTTATTAGTGCGGATGGGGCCACATCGCATCCTGTTGGATTGTGGTTTAGCGGATA
TTTCATCTATCCAAAAGAGTTTAACTCCATCGGTAAAGCGGGGTAATCCACCTTCACCAGCAGATTTAGTCTTGGTTACC
CATGCTCACCCAGATCATGCTAGAGGCTTGCTAGCACTGCATCAAGCTTTCCCTAATTTACCTATATATGGTAGCGAAGT
AACAAGCAAGCTGCTGCCTTTGAATTGGTTAGACCACAATCCCCAAGAAATTCCCCAACTGTGTCACGCCCTGCCGTTGC
GATCGCCTGTAGAACTACAAGATGGATTAGTTGCCGAAATCTTCCCCTGTGGACACTTGCCAGGAGCCGTGGCAATCCTC
CTCACATACACCACAGAACAGCGCTCTTACAAATTACTATATACAGGGGATTTCTTCCTATCTAACTCTCGCTTAGTGGA
AGGTTTGCGGTTAGAAGAATTACGGGGTATAGATTTAAATGTGTTGATTATAGAAGGGACTTACGGCACATCCAGACACC
CCCACCGCCGCAACCAAGAAAACCAACTAGCCGAGAGAATTAATCGCGCCATTAGCGATCGCTATTCTGTTGTCCTCCCT
ACCCCCGCCTTAGGCTTAGGACAAGAACTGTTGATGTTGTTGCGCTCCCATCACCATTTCACCGGCCGGGATTTAGATAT
TTGGGTTGATGGCGCTGTGGCTATTGGCTGTGATGCTTACTTGGAACTCCTACCCCACCTACCAGCATCAGTCCAAAACT
TCGCCCGTCATCAACCCTTATTTTGGGATGAGCGGGTGCGTCCCCGTGTGCGGCGTTTGCAAGCCGAAAACCGCAGCATA
GTAGGTAAATCGCCTTGTATTGTCCTGACAGATTCCACATCTGATTTAGAACAGTACTGTCAACCGGAAACTGGGCCTTG
GCTCATCTTATTGCCAGAAAAAATTGATATAAAAGTTAATAAAAAATACTCAGCCCCCACCACAGTAGAAAGTTATCTGC
TAGCTCAACACAGTGATGGGCCTGGCACTACCCAATTAATTCATAATTTACGTCCCCAGCACGTCGTTTTCGTTCACGGT
TCCCCTGCGTACCTAGCAGATTTAACCTGCTTAGAAGAGTTGCAGAACCGCTATCACATCCATTCACCGGCGGCTGAGAC
AATGGTAGAACTACTCATTGGCGAAACCTTTTTACAACCAGCCCCCCCAGAAACAAATTATGAAGGCGAACTGACAGAGT
TAGGGACAGTCATCACCATCAGCATCCCCGAAGCCATTACCGCCGATCCCCGGTGGCGACAGTTCGCCGACACTGGTTTA
ATCGAAGCCCGTTGGCAAGGGGAAGAACTGGTATTACGGGGATTAACCCAAAGAGAACTACTCAATCAAAATAGCGATCG
CAACATCCCCCCCGAAATTGATTGCTGCGGCACTTGTCGCCATCAAAGAGGACAGCGCTGCTGGAACCCTTCCTCTCCCC
TATATAACTTTAGAGTGACTTTAGAAGGTCACTGTCCGGCTTTTGAGCGATTATCCAATGGTGAATAG

Upstream 100 bases:

>100_bases
GGGGCGCACTACCAAAACTACCCCCAAGCTACAAAACCAAAATCTTCGTGAATCTTGGTTTTTCGGATAGGTCAATGATG
AGGTTGGAGGGGAGCAGAAC

Downstream 100 bases:

>100_bases
GGGGGTATAGGAGTATAAAGGGAATGCCTCGCTTGTAAAGGTGAAACTCTTGCTGTGACTAGGTATAGGGGTTAGGAGAA
AAACCGTATTTATGAGGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MRNNLSAYSNIETGEAATELECFPYSVQHNDEGVCLLVRMGPHRILLDCGLADISSIQKSLTPSVKRGNPPSPADLVLVT
HAHPDHARGLLALHQAFPNLPIYGSEVTSKLLPLNWLDHNPQEIPQLCHALPLRSPVELQDGLVAEIFPCGHLPGAVAIL
LTYTTEQRSYKLLYTGDFFLSNSRLVEGLRLEELRGIDLNVLIIEGTYGTSRHPHRRNQENQLAERINRAISDRYSVVLP
TPALGLGQELLMLLRSHHHFTGRDLDIWVDGAVAIGCDAYLELLPHLPASVQNFARHQPLFWDERVRPRVRRLQAENRSI
VGKSPCIVLTDSTSDLEQYCQPETGPWLILLPEKIDIKVNKKYSAPTTVESYLLAQHSDGPGTTQLIHNLRPQHVVFVHG
SPAYLADLTCLEELQNRYHIHSPAAETMVELLIGETFLQPAPPETNYEGELTELGTVITISIPEAITADPRWRQFADTGL
IEARWQGEELVLRGLTQRELLNQNSDRNIPPEIDCCGTCRHQRGQRCWNPSSPLYNFRVTLEGHCPAFERLSNGE

Sequences:

>Translated_555_residues
MRNNLSAYSNIETGEAATELECFPYSVQHNDEGVCLLVRMGPHRILLDCGLADISSIQKSLTPSVKRGNPPSPADLVLVT
HAHPDHARGLLALHQAFPNLPIYGSEVTSKLLPLNWLDHNPQEIPQLCHALPLRSPVELQDGLVAEIFPCGHLPGAVAIL
LTYTTEQRSYKLLYTGDFFLSNSRLVEGLRLEELRGIDLNVLIIEGTYGTSRHPHRRNQENQLAERINRAISDRYSVVLP
TPALGLGQELLMLLRSHHHFTGRDLDIWVDGAVAIGCDAYLELLPHLPASVQNFARHQPLFWDERVRPRVRRLQAENRSI
VGKSPCIVLTDSTSDLEQYCQPETGPWLILLPEKIDIKVNKKYSAPTTVESYLLAQHSDGPGTTQLIHNLRPQHVVFVHG
SPAYLADLTCLEELQNRYHIHSPAAETMVELLIGETFLQPAPPETNYEGELTELGTVITISIPEAITADPRWRQFADTGL
IEARWQGEELVLRGLTQRELLNQNSDRNIPPEIDCCGTCRHQRGQRCWNPSSPLYNFRVTLEGHCPAFERLSNGE
>Mature_555_residues
MRNNLSAYSNIETGEAATELECFPYSVQHNDEGVCLLVRMGPHRILLDCGLADISSIQKSLTPSVKRGNPPSPADLVLVT
HAHPDHARGLLALHQAFPNLPIYGSEVTSKLLPLNWLDHNPQEIPQLCHALPLRSPVELQDGLVAEIFPCGHLPGAVAIL
LTYTTEQRSYKLLYTGDFFLSNSRLVEGLRLEELRGIDLNVLIIEGTYGTSRHPHRRNQENQLAERINRAISDRYSVVLP
TPALGLGQELLMLLRSHHHFTGRDLDIWVDGAVAIGCDAYLELLPHLPASVQNFARHQPLFWDERVRPRVRRLQAENRSI
VGKSPCIVLTDSTSDLEQYCQPETGPWLILLPEKIDIKVNKKYSAPTTVESYLLAQHSDGPGTTQLIHNLRPQHVVFVHG
SPAYLADLTCLEELQNRYHIHSPAAETMVELLIGETFLQPAPPETNYEGELTELGTVITISIPEAITADPRWRQFADTGL
IEARWQGEELVLRGLTQRELLNQNSDRNIPPEIDCCGTCRHQRGQRCWNPSSPLYNFRVTLEGHCPAFERLSNGE

Specific function: Unknown

COG id: COG1236

COG function: function code J; Predicted exonuclease of the beta-lactamase fold involved in RNA processing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0047, MJ0162 and MJ1236 [H]

Homologues:

Organism=Homo sapiens, GI7706427, Length=430, Percent_Identity=23.7209302325581, Blast_Score=91, Evalue=4e-18,
Organism=Homo sapiens, GI33300633, Length=455, Percent_Identity=21.0989010989011, Blast_Score=85, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI32564696, Length=473, Percent_Identity=23.0443974630021, Blast_Score=98, Evalue=9e-21,
Organism=Saccharomyces cerevisiae, GI6323307, Length=418, Percent_Identity=23.444976076555, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21358523, Length=412, Percent_Identity=20.3883495145631, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 62248; Mature: 62248

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS00380 RHODANESE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNNLSAYSNIETGEAATELECFPYSVQHNDEGVCLLVRMGPHRILLDCGLADISSIQKS
CCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCEEEEECCCHHHHHHHHH
LTPSVKRGNPPSPADLVLVTHAHPDHARGLLALHQAFPNLPIYGSEVTSKLLPLNWLDHN
CCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEECHHHHHHHCCCCCCCCC
PQEIPQLCHALPLRSPVELQDGLVAEIFPCGHLPGAVAILLTYTTEQRSYKLLYTGDFFL
HHHHHHHHHHCCCCCCCCHHCCCEEEEECCCCCCCEEEEEEEEEECCCCEEEEEECCEEE
SNSRLVEGLRLEELRGIDLNVLIIEGTYGTSRHPHRRNQENQLAERINRAISDRYSVVLP
CCCHHHCCCCHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC
TPALGLGQELLMLLRSHHHFTGRDLDIWVDGAVAIGCDAYLELLPHLPASVQNFARHQPL
CCCCCCHHHHHHHHHHCCCCCCCCEEEEECCEEEECHHHHHHHHHCCCHHHHHHHHCCCC
FWDERVRPRVRRLQAENRSIVGKSPCIVLTDSTSDLEQYCQPETGPWLILLPEKIDIKVN
CCCHHHHHHHHHHHHCCCCEECCCCEEEEECCHHHHHHHHCCCCCCEEEEECCEEEEEEE
KKYSAPTTVESYLLAQHSDGPGTTQLIHNLRPQHVVFVHGSPAYLADLTCLEELQNRYHI
CCCCCCCHHHHHHHEECCCCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHEEE
HSPAAETMVELLIGETFLQPAPPETNYEGELTELGTVITISIPEAITADPRWRQFADTGL
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCEEEEEECCCCCCCCCCHHHHHCCCC
IEARWQGEELVLRGLTQRELLNQNSDRNIPPEIDCCGTCRHQRGQRCWNPSSPLYNFRVT
EEEECCCHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEE
LEGHCPAFERLSNGE
EECCCCHHHHHCCCC
>Mature Secondary Structure
MRNNLSAYSNIETGEAATELECFPYSVQHNDEGVCLLVRMGPHRILLDCGLADISSIQKS
CCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCEEEEECCCHHHHHHHHH
LTPSVKRGNPPSPADLVLVTHAHPDHARGLLALHQAFPNLPIYGSEVTSKLLPLNWLDHN
CCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEECHHHHHHHCCCCCCCCC
PQEIPQLCHALPLRSPVELQDGLVAEIFPCGHLPGAVAILLTYTTEQRSYKLLYTGDFFL
HHHHHHHHHHCCCCCCCCHHCCCEEEEECCCCCCCEEEEEEEEEECCCCEEEEEECCEEE
SNSRLVEGLRLEELRGIDLNVLIIEGTYGTSRHPHRRNQENQLAERINRAISDRYSVVLP
CCCHHHCCCCHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC
TPALGLGQELLMLLRSHHHFTGRDLDIWVDGAVAIGCDAYLELLPHLPASVQNFARHQPL
CCCCCCHHHHHHHHHHCCCCCCCCEEEEECCEEEECHHHHHHHHHCCCHHHHHHHHCCCC
FWDERVRPRVRRLQAENRSIVGKSPCIVLTDSTSDLEQYCQPETGPWLILLPEKIDIKVN
CCCHHHHHHHHHHHHCCCCEECCCCEEEEECCHHHHHHHHCCCCCCEEEEECCEEEEEEE
KKYSAPTTVESYLLAQHSDGPGTTQLIHNLRPQHVVFVHGSPAYLADLTCLEELQNRYHI
CCCCCCCHHHHHHHEECCCCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHEEE
HSPAAETMVELLIGETFLQPAPPETNYEGELTELGTVITISIPEAITADPRWRQFADTGL
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCEEEEEECCCCCCCCCCHHHHHCCCC
IEARWQGEELVLRGLTQRELLNQNSDRNIPPEIDCCGTCRHQRGQRCWNPSSPLYNFRVT
EEEECCCHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEE
LEGHCPAFERLSNGE
EECCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]