Click here to switch to the map view.

The map label for this gene is yibD [C]

Identifier: 17230559

GI number: 17230559

Start: 3716581

End: 3717552

Strand: Direct

Name: yibD [C]

Synonym: alr3067

Alternate gene names: 17230559

Gene position: 3716581-3717552 (Clockwise)

Preceding gene: 17230558

Following gene: 17230560

Centisome position: 57.95

GC content: 34.77

Gene sequence:

>972_bases
GTGGCAATATTAGGGAGGCTAAATTTTGTGCCAATAATTTCTGTAATCATTCCTGTATATAATGGTGAAAAAACAATTAT
TGAAACCATTGCTTCTGTTCAGCACCAAACCTTTTTAGATATTGAAATCATTGTGATCAATGATGGTTCAACAGATAATA
CTTTTGAACTTGTGAGAAATATTCAGGATAATCGCTTGAAAATATTCTCTTATGAAAATGGTGGTTTACCCGTAGCTCGT
AATCGCGGTATTACCCACGCTGTAGGTCAATTTATTGCCTTCATTGATGCTGATGATCTCTGGACAACAGACAAGCTAGA
GCTTCAGTTTGCTGCATTACAAGAATATCCAGAAGCAGGACTAGCTTACAGTTGGACTTATTACAAATTTGCTAATGAAG
CAGATTCTTATGCTGATGAATCTAATTCATTTGCAGGTGATGTTTATGCTGAATTGCTAATCAAGAATTTTTTGCAGAAC
GGTTCCAACCCTCTAATTCGGCGAGCCGCTATTGACTCTGTGGGACTTTTTGATCCTACACTGAAATCTTGCGAAGATTG
GGATTTTTACCTGCGGTTAGCGGCTAAATGGCAATTTGCTTTAGTTAAAAAAGCACAAATTATCTATCGTCAGTCCCCAA
CTGCGATGACATCGAAATTAGATGTTATGGAAAAATATAGTTCTATTGTCATAGAGAGAGCTTTTAATGCAGCTCCTCCA
CAATTACAACATTTAAAAAAACAAAGTCTAGCATGGGTTTACAAATTTACTGCTCAACAATGTTTGAAATATAACAGCCA
TAAACTCGCAGATATTAAATTAGCCGCTAAAAGATTAAAAATGGCTATTACTCTCTATCCAAAAAACCTTTTAGAAGACT
ACACTCATGGTCTCATAAGAAAACTTATTAAAAGTTGGATATTATTACAGTTTCACATGGTTTATATTCCTGAAAAATCT
CACAATATTTAA

Upstream 100 bases:

>100_bases
TTTTGTCGTTTTGTCAAAGATCCTGAAAAAATAGCCGATACAGTTCGGGAATTGATTGAGATGTCTGAAATTGCTAAAAA
CTAATTAACCCAGTGTAGAT

Downstream 100 bases:

>100_bases
TGAGTATTTATTAAGGGAACATCAAAAAATAAATTATCCGAAAATACTTATGCCTACTATATCTGTAATTATTCCTGCCT
ATAATGCTGAACGTACTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MAILGRLNFVPIISVIIPVYNGEKTIIETIASVQHQTFLDIEIIVINDGSTDNTFELVRNIQDNRLKIFSYENGGLPVAR
NRGITHAVGQFIAFIDADDLWTTDKLELQFAALQEYPEAGLAYSWTYYKFANEADSYADESNSFAGDVYAELLIKNFLQN
GSNPLIRRAAIDSVGLFDPTLKSCEDWDFYLRLAAKWQFALVKKAQIIYRQSPTAMTSKLDVMEKYSSIVIERAFNAAPP
QLQHLKKQSLAWVYKFTAQQCLKYNSHKLADIKLAAKRLKMAITLYPKNLLEDYTHGLIRKLIKSWILLQFHMVYIPEKS
HNI

Sequences:

>Translated_323_residues
MAILGRLNFVPIISVIIPVYNGEKTIIETIASVQHQTFLDIEIIVINDGSTDNTFELVRNIQDNRLKIFSYENGGLPVAR
NRGITHAVGQFIAFIDADDLWTTDKLELQFAALQEYPEAGLAYSWTYYKFANEADSYADESNSFAGDVYAELLIKNFLQN
GSNPLIRRAAIDSVGLFDPTLKSCEDWDFYLRLAAKWQFALVKKAQIIYRQSPTAMTSKLDVMEKYSSIVIERAFNAAPP
QLQHLKKQSLAWVYKFTAQQCLKYNSHKLADIKLAAKRLKMAITLYPKNLLEDYTHGLIRKLIKSWILLQFHMVYIPEKS
HNI
>Mature_322_residues
AILGRLNFVPIISVIIPVYNGEKTIIETIASVQHQTFLDIEIIVINDGSTDNTFELVRNIQDNRLKIFSYENGGLPVARN
RGITHAVGQFIAFIDADDLWTTDKLELQFAALQEYPEAGLAYSWTYYKFANEADSYADESNSFAGDVYAELLIKNFLQNG
SNPLIRRAAIDSVGLFDPTLKSCEDWDFYLRLAAKWQFALVKKAQIIYRQSPTAMTSKLDVMEKYSSIVIERAFNAAPPQ
LQHLKKQSLAWVYKFTAQQCLKYNSHKLADIKLAAKRLKMAITLYPKNLLEDYTHGLIRKLIKSWILLQFHMVYIPEKSH
NI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=95, Percent_Identity=43.1578947368421, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788372, Length=192, Percent_Identity=27.6041666666667, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 36956; Mature: 36825

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAILGRLNFVPIISVIIPVYNGEKTIIETIASVQHQTFLDIEIIVINDGSTDNTFELVRN
CCEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEEEEEECCCCCHHHHHHHC
IQDNRLKIFSYENGGLPVARNRGITHAVGQFIAFIDADDLWTTDKLELQFAALQEYPEAG
CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHCCCCC
LAYSWTYYKFANEADSYADESNSFAGDVYAELLIKNFLQNGSNPLIRRAAIDSVGLFDPT
CEEEEEHEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHH
LKSCEDWDFYLRLAAKWQFALVKKAQIIYRQSPTAMTSKLDVMEKYSSIVIERAFNAAPP
HHCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
QLQHLKKQSLAWVYKFTAQQCLKYNSHKLADIKLAAKRLKMAITLYPKNLLEDYTHGLIR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHH
KLIKSWILLQFHMVYIPEKSHNI
HHHHHHHHHHHHEEEECCCCCCC
>Mature Secondary Structure 
AILGRLNFVPIISVIIPVYNGEKTIIETIASVQHQTFLDIEIIVINDGSTDNTFELVRN
CEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEEEEEECCCCCHHHHHHHC
IQDNRLKIFSYENGGLPVARNRGITHAVGQFIAFIDADDLWTTDKLELQFAALQEYPEAG
CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHCCCCC
LAYSWTYYKFANEADSYADESNSFAGDVYAELLIKNFLQNGSNPLIRRAAIDSVGLFDPT
CEEEEEHEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHH
LKSCEDWDFYLRLAAKWQFALVKKAQIIYRQSPTAMTSKLDVMEKYSSIVIERAFNAAPP
HHCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
QLQHLKKQSLAWVYKFTAQQCLKYNSHKLADIKLAAKRLKMAITLYPKNLLEDYTHGLIR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHH
KLIKSWILLQFHMVYIPEKSHNI
HHHHHHHHHHHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]