Click here to switch to the map view.

The map label for this gene is 17230532

Identifier: 17230532

GI number: 17230532

Start: 3680976

End: 3682118

Strand: Reverse

Name: 17230532

Synonym: all3040

Alternate gene names: NA

Gene position: 3682118-3680976 (Counterclockwise)

Preceding gene: 17230533

Following gene: 17230531

Centisome position: 57.41

GC content: 49.43

Gene sequence:

>1143_bases
ATGAAGCAAACAGATGTAGTAGTTATTGGTAGCGGCGTTGGGGGGTTGAGTTGTGCTGCTTTACTGGCGCGTTATGGGTT
TGATGTGACTGTTTGTGAGAGTCATTCGATCCCTGGTGGGGCGGCGCACGGTTTTGAACGTCAAGGATTTAAGTTTGATT
CGGGGCCTTCTCTTTACTCTGGTTTGTCTTATAGTCCTTCGGTTAACCCTTTACGACAGGTGCTAGATGCAGTTGGTGTT
GATTTGCCCTGGGTCACTTATGATACTTGGGGCTGTTGCTTACCTGAAGGTGATTTTGATGCTGCGGTGGGTGCAGAACA
ATTTTGTGAAGTGCTGGGGAGACTGCGGGGAGAGGCGGCGGTGGCTGAATGGCGGCGGTTGCAACAGGTGATGACACCAC
TAGCCCAGGCGGCGATCGCTCTTCCCCCAGCTGCATTACGCTGGGATATAGGCGCAGCACTAACTATCGGCAGATTTGCT
CCCACTCTGGCTAAACAATCTGCGAATTTCCTCAAGTTAACGGGGCCTTTCTCTCGCATCATGGATGGGGTTGTCCATGA
CCAGTTTATTAGTAACTGGCTGAATTTACTGTGTTTTCTCCTCTCTGGACTCCCAGCTTCGGGAACCAATGCGGCAGAGG
TAGCATTCATGTTCGCCGATTGGTATCGCCCAGGAGTAGCTTTAGATTACCCCATTGGTGGTAGTGGTGCTTTAGTTAAT
GCTTTGGTAGAGGGATTAAAAAAATACGGTGGGGAATTGCTACTCAATGCCCATGTTGAACAAATATTGGTAGAAGGTAA
CAAAGCGGTAGGTGTCGGGCTGCGAGGTGGGCAAGAAATTCGGGCGCGGCGGGCGGTTGTGTCTAATGCTTCGATCTGGG
ATACGCTGAAGTTATTACCGGAGGGGGCTGTATCCCAAAAATTCCGCAGCCAACGCCAAGGCACACCCGAATGTGATAGT
TTCATGCACCTGCATCTGGGTATTAATGCCCAAGGTTTACCCCTAGATTTGGCTTGTCATTATATTGTGGTGAATGATTG
GGAATTGGGGATTACTGCGCCCCAGAATGTTGTTTTGGTATCGATTCCCTCAATTCTTGACCCGTCTTTAGCACCACAGG
GCAAACACGTAATTCATATATAA

Upstream 100 bases:

>100_bases
TGAATTTTAAATTGTATGACGCACCCTACTGGACTGTCTAATTTAGAATAGTGTATTGGATGGGGAAAAATTAAACGCAG
ATAAACGCGGATAAACGCGG

Downstream 100 bases:

>100_bases
CGCGGTGTGCAACTTTCTCTCAAACCTAACCCCCAACCCCTTCCCTGCGAGGGAAGGGGAATAAGATTCAAAGCCTCTCT
CCGCTTCGGGGAGAGGTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: FAD Dependent Oxidoreductase; Carotene Isomerase; Amine Oxidase; Phytoene Dehydrogenase; All-Trans-Retinol; Carotenoid Cis-Trans Isomerase; Phytoene Dehydrogenase-Related Protein; Bacterial-Type Phytoene Dehydrogenase

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MKQTDVVVIGSGVGGLSCAALLARYGFDVTVCESHSIPGGAAHGFERQGFKFDSGPSLYSGLSYSPSVNPLRQVLDAVGV
DLPWVTYDTWGCCLPEGDFDAAVGAEQFCEVLGRLRGEAAVAEWRRLQQVMTPLAQAAIALPPAALRWDIGAALTIGRFA
PTLAKQSANFLKLTGPFSRIMDGVVHDQFISNWLNLLCFLLSGLPASGTNAAEVAFMFADWYRPGVALDYPIGGSGALVN
ALVEGLKKYGGELLLNAHVEQILVEGNKAVGVGLRGGQEIRARRAVVSNASIWDTLKLLPEGAVSQKFRSQRQGTPECDS
FMHLHLGINAQGLPLDLACHYIVVNDWELGITAPQNVVLVSIPSILDPSLAPQGKHVIHI

Sequences:

>Translated_380_residues
MKQTDVVVIGSGVGGLSCAALLARYGFDVTVCESHSIPGGAAHGFERQGFKFDSGPSLYSGLSYSPSVNPLRQVLDAVGV
DLPWVTYDTWGCCLPEGDFDAAVGAEQFCEVLGRLRGEAAVAEWRRLQQVMTPLAQAAIALPPAALRWDIGAALTIGRFA
PTLAKQSANFLKLTGPFSRIMDGVVHDQFISNWLNLLCFLLSGLPASGTNAAEVAFMFADWYRPGVALDYPIGGSGALVN
ALVEGLKKYGGELLLNAHVEQILVEGNKAVGVGLRGGQEIRARRAVVSNASIWDTLKLLPEGAVSQKFRSQRQGTPECDS
FMHLHLGINAQGLPLDLACHYIVVNDWELGITAPQNVVLVSIPSILDPSLAPQGKHVIHI
>Mature_380_residues
MKQTDVVVIGSGVGGLSCAALLARYGFDVTVCESHSIPGGAAHGFERQGFKFDSGPSLYSGLSYSPSVNPLRQVLDAVGV
DLPWVTYDTWGCCLPEGDFDAAVGAEQFCEVLGRLRGEAAVAEWRRLQQVMTPLAQAAIALPPAALRWDIGAALTIGRFA
PTLAKQSANFLKLTGPFSRIMDGVVHDQFISNWLNLLCFLLSGLPASGTNAAEVAFMFADWYRPGVALDYPIGGSGALVN
ALVEGLKKYGGELLLNAHVEQILVEGNKAVGVGLRGGQEIRARRAVVSNASIWDTLKLLPEGAVSQKFRSQRQGTPECDS
FMHLHLGINAQGLPLDLACHYIVVNDWELGITAPQNVVLVSIPSILDPSLAPQGKHVIHI

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40567; Mature: 40567

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQTDVVVIGSGVGGLSCAALLARYGFDVTVCESHSIPGGAAHGFERQGFKFDSGPSLYS
CCCCCEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHC
GLSYSPSVNPLRQVLDAVGVDLPWVTYDTWGCCLPEGDFDAAVGAEQFCEVLGRLRGEAA
CCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHCCHHH
VAEWRRLQQVMTPLAQAAIALPPAALRWDIGAALTIGRFAPTLAKQSANFLKLTGPFSRI
HHHHHHHHHHHHHHHHHHHHCCCHHHEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHHH
MDGVVHDQFISNWLNLLCFLLSGLPASGTNAAEVAFMFADWYRPGVALDYPIGGSGALVN
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCHHHHH
ALVEGLKKYGGELLLNAHVEQILVEGNKAVGVGLRGGQEIRARRAVVSNASIWDTLKLLP
HHHHHHHHCCCCEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHCC
EGAVSQKFRSQRQGTPECDSFMHLHLGINAQGLPLDLACHYIVVNDWELGITAPQNVVLV
CCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEECEEECCCCCCCEEEE
SIPSILDPSLAPQGKHVIHI
ECCHHCCCCCCCCCCEEEEC
>Mature Secondary Structure
MKQTDVVVIGSGVGGLSCAALLARYGFDVTVCESHSIPGGAAHGFERQGFKFDSGPSLYS
CCCCCEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHC
GLSYSPSVNPLRQVLDAVGVDLPWVTYDTWGCCLPEGDFDAAVGAEQFCEVLGRLRGEAA
CCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHCCHHH
VAEWRRLQQVMTPLAQAAIALPPAALRWDIGAALTIGRFAPTLAKQSANFLKLTGPFSRI
HHHHHHHHHHHHHHHHHHHHCCCHHHEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHHH
MDGVVHDQFISNWLNLLCFLLSGLPASGTNAAEVAFMFADWYRPGVALDYPIGGSGALVN
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCHHHHH
ALVEGLKKYGGELLLNAHVEQILVEGNKAVGVGLRGGQEIRARRAVVSNASIWDTLKLLP
HHHHHHHHCCCCEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHCC
EGAVSQKFRSQRQGTPECDSFMHLHLGINAQGLPLDLACHYIVVNDWELGITAPQNVVLV
CCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEECEEECCCCCCCEEEE
SIPSILDPSLAPQGKHVIHI
ECCHHCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA