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The map label for this gene is 17230531

Identifier: 17230531

GI number: 17230531

Start: 3680427

End: 3680786

Strand: Reverse

Name: 17230531

Synonym: all3039

Alternate gene names: NA

Gene position: 3680786-3680427 (Counterclockwise)

Preceding gene: 17230532

Following gene: 17230528

Centisome position: 57.39

GC content: 51.39

Gene sequence:

>360_bases
GTGGACAGAAGAAGTCAGGAATATGAACAACAAAAGCGATCGCGTGCCGAGGTGATGTGGCAAGCTGTAGAACGTATCAT
TCCTGATATTCGCTCTCGTTGTGAAATCCAATTGGTAGGTACACCCCTTACCCATGAGAGATTTTTACGCCGCTATCGTG
GTTCCTACGGCCCCGCAATTTCCGCCGCCTCTGGTTTGTTTCCTGGTCATGGTACACCCCTTCCAGGGTTAATGTGCTGT
GGTGATTCCACATTTCCCGGTATCGGTCTGCCAGCCGTCGCTGCTAGTGGGATGATTGTGGCTAATACCCTAGCTCCGGT
CAGTCAGCATTTGGCGATGCTGGACAGAGTTGGCCTTTAA

Upstream 100 bases:

>100_bases
GGAGAGGTTTGGGGAGAGGTTTGGAGAGGGGTTTCAAAAATAAGTCGCACATCGCGTTATATATACTCCTGGTAATGAAC
CTTACGCACTGTGGCAAGGG

Downstream 100 bases:

>100_bases
ACGCGGGGGTACGCAGAGTTTGGGTTTAATCTGGTAAGAATTACGCATGAAAACGAAATACCAAGGATAAGGGTTATGAA
TCAATTCAAAATTCAAAACA

Product: hypothetical protein

Products: NA

Alternate protein names: FAD Dependent Oxidoreductase; Carotene Isomerase; Amine Oxidase; Phytoene Dehydrogenase; All-Trans-Retinol; Carotenoid Cis-Trans Isomerase; Phytoene Dehydrogenase-Related Protein; Bacterial-Type Phytoene Dehydrogenase

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MDRRSQEYEQQKRSRAEVMWQAVERIIPDIRSRCEIQLVGTPLTHERFLRRYRGSYGPAISAASGLFPGHGTPLPGLMCC
GDSTFPGIGLPAVAASGMIVANTLAPVSQHLAMLDRVGL

Sequences:

>Translated_119_residues
MDRRSQEYEQQKRSRAEVMWQAVERIIPDIRSRCEIQLVGTPLTHERFLRRYRGSYGPAISAASGLFPGHGTPLPGLMCC
GDSTFPGIGLPAVAASGMIVANTLAPVSQHLAMLDRVGL
>Mature_119_residues
MDRRSQEYEQQKRSRAEVMWQAVERIIPDIRSRCEIQLVGTPLTHERFLRRYRGSYGPAISAASGLFPGHGTPLPGLMCC
GDSTFPGIGLPAVAASGMIVANTLAPVSQHLAMLDRVGL

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12993; Mature: 12993

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRRSQEYEQQKRSRAEVMWQAVERIIPDIRSRCEIQLVGTPLTHERFLRRYRGSYGPAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHCCCCCCHH
SAASGLFPGHGTPLPGLMCCGDSTFPGIGLPAVAASGMIVANTLAPVSQHLAMLDRVGL
HHHCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRRSQEYEQQKRSRAEVMWQAVERIIPDIRSRCEIQLVGTPLTHERFLRRYRGSYGPAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHCCCCCCHH
SAASGLFPGHGTPLPGLMCCGDSTFPGIGLPAVAASGMIVANTLAPVSQHLAMLDRVGL
HHHCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA