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The map label for this gene is 17230453

Identifier: 17230453

GI number: 17230453

Start: 3602089

End: 3603009

Strand: Reverse

Name: 17230453

Synonym: all2961

Alternate gene names: NA

Gene position: 3603009-3602089 (Counterclockwise)

Preceding gene: 17230454

Following gene: 17230452

Centisome position: 56.18

GC content: 34.31

Gene sequence:

>921_bases
ATGCCTGTGCTGAGGATTAAAAAAATAGGTTATAAACTAGACCAATCACCTTTCTATTGTTTGCAATCTAAAGCAAAACT
TGCAACTTTATTAGGCGTAAGCCGCAGTAGGCTCATACAATTGGCTCGCTCGGAAAGTTTATATATAGAAAAAGAAATTA
TTCATCCAAGGCGAAAAAAATCTCGTCTTGTGGAAAAACCAAAATATGAATTAAAGCTTATTCAAAAGCGAATTGAAGGG
CTTCTCAAGCGAATTGAAATACCTAAATATATTCATGCACCAACAAAGGGACGCTCTTATGTTAGTAATGCAAAAGCTCA
TCTAAATAGTTATGTGATAAGCAGTCTAGATATTGTGAAATACTTTCCATCCACAAAATCAAAACGTGTTTATTGGTTTT
TCCACACACGGATGAAATGCTCTCCAGATGTAGCGGCAATTTTAACAAAACTATCTACCTATAAAGAACATCTTCCAACT
GGAAGCCCCTTGAGTCCAATTTTGTCATACTTTGCTCATATAGATATGTGGGAGGAAATTAATAATATTGTTGAGGATGC
AGGTTGTATTCTTACCGTCTATATGGACGATGTAACAATATCGGGAGACTATGTAAGCCGTAATTTGATTTGGCAGATTA
AAAAGAAATTTCATCGGTACGGATTAAGTAGTAATACAAAGAAAGAAAAATATTATATTGGAAAAAACTCGCGAAAAATA
ACTGGCGTGATCCTTGATTTTGAAAAAGGGGTTTTAAAAATTCCTAATCGACAGCACAAAAAAATGTACAGTATCCGCAA
GCAAATCTCTAAAGAAACCCATCCTGACACCTATGCTCATCTAATGAGTAAGTTGAAAGGTTTAAAATCACAGGTACAGC
AGATTCATAAAGCTAACAATACTCAAACAAATGAAAATTGA

Upstream 100 bases:

>100_bases
TCGGAAAACTTAGACAAGGATGTAAAAACGGAAAAATTGAGGAATTTTGTATCTTCTAAGATTATTGCAATCCTCAACTT
TATTGCTGAAAGGTCTGGTA

Downstream 100 bases:

>100_bases
ATATTTATTCAGTTCAATTCAATAACTGTAAGAATAATGTTGAAAGAAGCAGCACTCTACCATCGTCATTTTGATGGAAC
ACTTTATCCCCTAACCCATA

Product: hypothetical protein

Products: NA

Alternate protein names: EC86-RT; Reverse transcriptase [H]

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MPVLRIKKIGYKLDQSPFYCLQSKAKLATLLGVSRSRLIQLARSESLYIEKEIIHPRRKKSRLVEKPKYELKLIQKRIEG
LLKRIEIPKYIHAPTKGRSYVSNAKAHLNSYVISSLDIVKYFPSTKSKRVYWFFHTRMKCSPDVAAILTKLSTYKEHLPT
GSPLSPILSYFAHIDMWEEINNIVEDAGCILTVYMDDVTISGDYVSRNLIWQIKKKFHRYGLSSNTKKEKYYIGKNSRKI
TGVILDFEKGVLKIPNRQHKKMYSIRKQISKETHPDTYAHLMSKLKGLKSQVQQIHKANNTQTNEN

Sequences:

>Translated_306_residues
MPVLRIKKIGYKLDQSPFYCLQSKAKLATLLGVSRSRLIQLARSESLYIEKEIIHPRRKKSRLVEKPKYELKLIQKRIEG
LLKRIEIPKYIHAPTKGRSYVSNAKAHLNSYVISSLDIVKYFPSTKSKRVYWFFHTRMKCSPDVAAILTKLSTYKEHLPT
GSPLSPILSYFAHIDMWEEINNIVEDAGCILTVYMDDVTISGDYVSRNLIWQIKKKFHRYGLSSNTKKEKYYIGKNSRKI
TGVILDFEKGVLKIPNRQHKKMYSIRKQISKETHPDTYAHLMSKLKGLKSQVQQIHKANNTQTNEN
>Mature_305_residues
PVLRIKKIGYKLDQSPFYCLQSKAKLATLLGVSRSRLIQLARSESLYIEKEIIHPRRKKSRLVEKPKYELKLIQKRIEGL
LKRIEIPKYIHAPTKGRSYVSNAKAHLNSYVISSLDIVKYFPSTKSKRVYWFFHTRMKCSPDVAAILTKLSTYKEHLPTG
SPLSPILSYFAHIDMWEEINNIVEDAGCILTVYMDDVTISGDYVSRNLIWQIKKKFHRYGLSSNTKKEKYYIGKNSRKIT
GVILDFEKGVLKIPNRQHKKMYSIRKQISKETHPDTYAHLMSKLKGLKSQVQQIHKANNTQTNEN

Specific function: Participates in the synthesis of a msDNA (a branched RNA linked by a 2',5'-phosphodiester linkage to a single-stranded DNA) of unknown function. The retron transcript serves as primer and template to the reaction, and codes for the RT [H]

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000123
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: =2.7.7.49 [H]

Molecular weight: Translated: 35603; Mature: 35472

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVLRIKKIGYKLDQSPFYCLQSKAKLATLLGVSRSRLIQLARSESLYIEKEIIHPRRKK
CCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEHHHCCCHHHH
SRLVEKPKYELKLIQKRIEGLLKRIEIPKYIHAPTKGRSYVSNAKAHLNSYVISSLDIVK
HHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YFPSTKSKRVYWFFHTRMKCSPDVAAILTKLSTYKEHLPTGSPLSPILSYFAHIDMWEEI
HCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
NNIVEDAGCILTVYMDDVTISGDYVSRNLIWQIKKKFHRYGLSSNTKKEKYYIGKNSRKI
HHHHHCCCEEEEEEECCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEE
TGVILDFEKGVLKIPNRQHKKMYSIRKQISKETHPDTYAHLMSKLKGLKSQVQQIHKANN
EEEEEECCCCCEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
TQTNEN
CCCCCC
>Mature Secondary Structure 
PVLRIKKIGYKLDQSPFYCLQSKAKLATLLGVSRSRLIQLARSESLYIEKEIIHPRRKK
CCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEHHHCCCHHHH
SRLVEKPKYELKLIQKRIEGLLKRIEIPKYIHAPTKGRSYVSNAKAHLNSYVISSLDIVK
HHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YFPSTKSKRVYWFFHTRMKCSPDVAAILTKLSTYKEHLPTGSPLSPILSYFAHIDMWEEI
HCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
NNIVEDAGCILTVYMDDVTISGDYVSRNLIWQIKKKFHRYGLSSNTKKEKYYIGKNSRKI
HHHHHCCCEEEEEEECCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEE
TGVILDFEKGVLKIPNRQHKKMYSIRKQISKETHPDTYAHLMSKLKGLKSQVQQIHKANN
EEEEEECCCCCEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
TQTNEN
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2466573; 1722556 [H]