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The map label for this gene is rbpB

Identifier: 17230420

GI number: 17230420

Start: 3565811

End: 3566122

Strand: Reverse

Name: rbpB

Synonym: all2928

Alternate gene names: 17230420

Gene position: 3566122-3565811 (Counterclockwise)

Preceding gene: 17230421

Following gene: 17230416

Centisome position: 55.6

GC content: 47.12

Gene sequence:

>312_bases
ATGTCTATTTATGTTGGTAATCTTTCTTACGACGTTACAGAAGAAAGCTTGAATGCCGTATTTGCAGAATATGGTTCTGT
AAAGCGGGTTCAGCTACCTGTAGACCGTGAAACCGGCCGTGTACGCGGCTTTGGATTCGTGGAAATGGGCAGTGATGCAG
AAGAAACAGCAGCAATTGAAGCACTTGACGGTGCTGAGTGGATGGGACGCGACCTTAAAGTAAATAAGGCTAAACCCAGA
GAAGACAGAGGCGGTTCTAGGGGTTCCTTTGGCGGCAATCGCAGCAACAACAACTTCCGTAACCGCTATTAA

Upstream 100 bases:

>100_bases
CGTTTGTTTTGAGTATTGACAGGCTTTTCCCTTTTGGTATTTACAGACATTTCTCCGAAATCTCAATCCCTAGACACTTC
TGATTTTGGAGACAATAAAT

Downstream 100 bases:

>100_bases
GAAAATATAGATTTGAAGTGGAGAACAGGGAATGAAGAAGTAGTTATTTCTACCTCCTAACTTCCCAAAATTTTAATGCT
CCTTTTGAACAAAACTTATC

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 102

Protein sequence:

>103_residues
MSIYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKPR
EDRGGSRGSFGGNRSNNNFRNRY

Sequences:

>Translated_103_residues
MSIYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKPR
EDRGGSRGSFGGNRSNNNFRNRY
>Mature_102_residues
SIYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKPRE
DRGGSRGSFGGNRSNNNFRNRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain

Homologues:

Organism=Homo sapiens, GI35493811, Length=90, Percent_Identity=37.7777777777778, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI4757926, Length=90, Percent_Identity=37.7777777777778, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI45439316, Length=84, Percent_Identity=39.2857142857143, Blast_Score=69, Evalue=6e-13,
Organism=Homo sapiens, GI14149675, Length=82, Percent_Identity=40.2439024390244, Blast_Score=69, Evalue=7e-13,
Organism=Homo sapiens, GI5174637, Length=84, Percent_Identity=39.2857142857143, Blast_Score=69, Evalue=7e-13,
Organism=Homo sapiens, GI4557493, Length=82, Percent_Identity=39.0243902439024, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI303305009, Length=84, Percent_Identity=39.2857142857143, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI4502847, Length=90, Percent_Identity=40, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI116734694, Length=90, Percent_Identity=34.4444444444444, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=44.1558441558442, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=48.0519480519481, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=41.4634146341463, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=40.7894736842105, Blast_Score=69, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17539498, Length=78, Percent_Identity=39.7435897435897, Blast_Score=67, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322191, Length=77, Percent_Identity=37.6623376623377, Blast_Score=61, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=42.3076923076923, Blast_Score=72, Evalue=8e-14,
Organism=Drosophila melanogaster, GI17137710, Length=82, Percent_Identity=40.2439024390244, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI19920866, Length=82, Percent_Identity=37.8048780487805, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582412, Length=82, Percent_Identity=37.8048780487805, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582417, Length=82, Percent_Identity=37.8048780487805, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45550943, Length=82, Percent_Identity=37.8048780487805, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582419, Length=82, Percent_Identity=37.8048780487805, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582423, Length=82, Percent_Identity=37.8048780487805, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582421, Length=82, Percent_Identity=37.8048780487805, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBPB_NOSS1 (Q44554)

Other databases:

- EMBL:   BA000019
- PIR:   AI2171
- PIR:   S44025
- PIR:   S58675
- RefSeq:   NP_486968.1
- HSSP:   Q9UNP9
- ProteinModelPortal:   Q44554
- SMR:   Q44554
- STRING:   Q44554
- GeneID:   1106526
- GenomeReviews:   BA000019_GR
- KEGG:   ana:all2928
- eggNOG:   COG0724
- HOGENOM:   HBG756718
- OMA:   SRIITDR
- ProtClustDB:   CLSK2302199
- BioCyc:   NSP103690:ALL2928-MONOMER
- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465
- Gene3D:   G3DSA:3.30.70.330
- PANTHER:   PTHR10432:SF31
- SMART:   SM00360

Pfam domain/function: PF00076 RRM_1

EC number: NA

Molecular weight: Translated: 11429; Mature: 11298

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIE
CEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCCCHHHEEE
ALDGAEWMGRDLKVNKAKPREDRGGSRGSFGGNRSNNNFRNRY
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIE
EEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCCCHHHEEE
ALDGAEWMGRDLKVNKAKPREDRGGSRGSFGGNRSNNNFRNRY
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840