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The map label for this gene is ycdL [C]

Identifier: 17229614

GI number: 17229614

Start: 2540872

End: 2541480

Strand: Direct

Name: ycdL [C]

Synonym: alr2122

Alternate gene names: 17229614

Gene position: 2540872-2541480 (Clockwise)

Preceding gene: 17229612

Following gene: 17229615

Centisome position: 39.62

GC content: 40.89

Gene sequence:

>609_bases
ATGCAACCCCAAAGTACTGCTGTGATCTTGATTGGTTATCAAAATGACTACTTTGCAGCCGATGGTATTCTACATAATGT
CATTGAGGAATCCTCAAGAGCCACCAAAGTATTAGAAAACACGGTTGAGCTTGTAGGATGTTTGCTACAGATTCCAGTAT
TGATGATTGCCACACCGATTTTTTTTACGCCAAACTACCAGGAATTGGTTGAACCTGTTGGCATTCTTAAAACTATCAAA
GAAGTTGGGGCTTTTCAAGCTGATACGAAGGGATCGCAGATGATTGATGAGTTGCTACCCTTTTGCAGCAAAATTCTCGA
AGTTCCTGGAAAACGAGGATTTAATGCTTTCATGAATACTAACTTAGACATGATTCTCCATGAAAAAGAGATTACTCATG
TAGTTATAGCTGGTGCAGTCACTTCGGTTTGTATCGATTCTACAGGTCGTTCTGCTCATGAAAAAGGTTACCAGGTGGTT
ATTTTGTCTGATTGCACTTCTGCTCGCACGGTGTTTGAGCAAGAATTCTACCACACTCATGTCTTCCCCTTATACGCCGA
TACAATTAACCACACCGAGCTACTTCAGCGTTTGACGAGTACAGTATAA

Upstream 100 bases:

>100_bases
ATCGGATTCCTATATATGTTTTCCCTGTTAGTTATAGCTAGAAACACACTTAAGACGGGAATAATAAAGTGTCTGTACAT
ACTAAATAGTTAGAAATACA

Downstream 100 bases:

>100_bases
TGTCAGATTTTAGCAATGAATTGCATACACAGATTCAGTACAGTTTGATTGAGAAATTGTCTGAATCCGAACGGCGTTAC
CGGGAATTAGTGGATAGTCT

Product: hypothetical protein

Products: NA

Alternate protein names: Isochorismatase Family Protein; Isochorismatase Hydrolase/Endoribonuclease L-PSP; Hydrolase; Pyrimidine Utilization Protein B

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MQPQSTAVILIGYQNDYFAADGILHNVIEESSRATKVLENTVELVGCLLQIPVLMIATPIFFTPNYQELVEPVGILKTIK
EVGAFQADTKGSQMIDELLPFCSKILEVPGKRGFNAFMNTNLDMILHEKEITHVVIAGAVTSVCIDSTGRSAHEKGYQVV
ILSDCTSARTVFEQEFYHTHVFPLYADTINHTELLQRLTSTV

Sequences:

>Translated_202_residues
MQPQSTAVILIGYQNDYFAADGILHNVIEESSRATKVLENTVELVGCLLQIPVLMIATPIFFTPNYQELVEPVGILKTIK
EVGAFQADTKGSQMIDELLPFCSKILEVPGKRGFNAFMNTNLDMILHEKEITHVVIAGAVTSVCIDSTGRSAHEKGYQVV
ILSDCTSARTVFEQEFYHTHVFPLYADTINHTELLQRLTSTV
>Mature_202_residues
MQPQSTAVILIGYQNDYFAADGILHNVIEESSRATKVLENTVELVGCLLQIPVLMIATPIFFTPNYQELVEPVGILKTIK
EVGAFQADTKGSQMIDELLPFCSKILEVPGKRGFNAFMNTNLDMILHEKEITHVVIAGAVTSVCIDSTGRSAHEKGYQVV
ILSDCTSARTVFEQEFYHTHVFPLYADTINHTELLQRLTSTV

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081820, Length=178, Percent_Identity=30.8988764044944, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22419; Mature: 22419

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPQSTAVILIGYQNDYFAADGILHNVIEESSRATKVLENTVELVGCLLQIPVLMIATPI
CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FFTPNYQELVEPVGILKTIKEVGAFQADTKGSQMIDELLPFCSKILEVPGKRGFNAFMNT
EECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCC
NLDMILHEKEITHVVIAGAVTSVCIDSTGRSAHEKGYQVVILSDCTSARTVFEQEFYHTH
CHHEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEECCCHHHHHHHHHHHHHH
VFPLYADTINHTELLQRLTSTV
HHHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure
MQPQSTAVILIGYQNDYFAADGILHNVIEESSRATKVLENTVELVGCLLQIPVLMIATPI
CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FFTPNYQELVEPVGILKTIKEVGAFQADTKGSQMIDELLPFCSKILEVPGKRGFNAFMNT
EECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCC
NLDMILHEKEITHVVIAGAVTSVCIDSTGRSAHEKGYQVVILSDCTSARTVFEQEFYHTH
CHHEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEECCCHHHHHHHHHHHHHH
VFPLYADTINHTELLQRLTSTV
HHHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA