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The map label for this gene is ydeP [H]

Identifier: 17229598

GI number: 17229598

Start: 2524933

End: 2525265

Strand: Direct

Name: ydeP [H]

Synonym: alr2106

Alternate gene names: 17229598

Gene position: 2524933-2525265 (Clockwise)

Preceding gene: 17229596

Following gene: 17229603

Centisome position: 39.37

GC content: 41.74

Gene sequence:

>333_bases
ATGAAAGCTGAAGCACAAAAAGATGAAAAGCTAACTTGTGAAGTGGAAACCACTTTGAAGGTAATTGGCGGACGCTGGAA
GGTTTTAATTATCAGAGAATTGATGTTGGGTGTAAAACGATTTGGGGAATTGCAGCGAGCCTTACCCGGAATTACACAAA
AGATGCTTACCCAACAACTCCGGGAAATGGAAGACGACGGGATCATACATCGACAAGTTTATGCACAAATCCCCCCAAAG
GTAGAATATTCTTTAACACCTGTGGGGGTAAGCTTACAGCCAATTCTCTATGCTATGCACGAATGGGGTGTAAAGCATTT
AGCAAACAAATAA

Upstream 100 bases:

>100_bases
TTTGTCAAGTTCAAAAATACTTGCTGAATCGACTTTAAACTATGTAAAGTTGATATGAAAAGTACGCACTTAAAAGTAAG
CTACTTACTTAAAAGTAACT

Downstream 100 bases:

>100_bases
TTACCAAAGCCGAATTTGTTTCAATTAGTTACTTTGCAAATATTCAATTGCTGCTTCTAATTTAGAGGGGTAGCTTTCAG
CAAATCTTTCAAACCAAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MKAEAQKDEKLTCEVETTLKVIGGRWKVLIIRELMLGVKRFGELQRALPGITQKMLTQQLREMEDDGIIHRQVYAQIPPK
VEYSLTPVGVSLQPILYAMHEWGVKHLANK

Sequences:

>Translated_110_residues
MKAEAQKDEKLTCEVETTLKVIGGRWKVLIIRELMLGVKRFGELQRALPGITQKMLTQQLREMEDDGIIHRQVYAQIPPK
VEYSLTPVGVSLQPILYAMHEWGVKHLANK
>Mature_110_residues
MKAEAQKDEKLTCEVETTLKVIGGRWKVLIIRELMLGVKRFGELQRALPGITQKMLTQQLREMEDDGIIHRQVYAQIPPK
VEYSLTPVGVSLQPILYAMHEWGVKHLANK

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=90, Percent_Identity=41.1111111111111, Blast_Score=81, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12610; Mature: 12610

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAEAQKDEKLTCEVETTLKVIGGRWKVLIIRELMLGVKRFGELQRALPGITQKMLTQQL
CCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
REMEDDGIIHRQVYAQIPPKVEYSLTPVGVSLQPILYAMHEWGVKHLANK
HHHCCCCCHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKAEAQKDEKLTCEVETTLKVIGGRWKVLIIRELMLGVKRFGELQRALPGITQKMLTQQL
CCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
REMEDDGIIHRQVYAQIPPKVEYSLTPVGVSLQPILYAMHEWGVKHLANK
HHHCCCCCHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]