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The map label for this gene is pocR [H]

Identifier: 17229527

GI number: 17229527

Start: 2434538

End: 2435383

Strand: Reverse

Name: pocR [H]

Synonym: all2035

Alternate gene names: 17229527

Gene position: 2435383-2434538 (Counterclockwise)

Preceding gene: 17229529

Following gene: 17229526

Centisome position: 37.97

GC content: 41.96

Gene sequence:

>846_bases
GTGAGTAGAACTATGGTTTTTGACAGCTGTATTTCCGAGCAACATACTTATCAAGTTACACAGCAGCTAGAAAAAGAGTT
GCGCCTTACTAATTTGCTGATGGATTGTGTCACAGATGCGGTGTTCTGGGTAAAACCAAACACCAGGATTTTATACGTTA
ATGATGCTGCGTGTAGTTTAGTAGGCTACTCCCGTGAAGAACTGCTTTGTATGAGTATTCAATACCTAAACTTAGAATTT
TTGATGGAAGTTTGGTTACAGCACTGGGAAACTATTAAACAAAAAGGGTCTTTATATTTTGAATCTCTGTATAAGACTCA
AGCAGGTTTAAGTTTACCTGTCCAAACCACTGTTACCTATATGGAAGAAGACGGTAGGGAATACGGCTGCATCTCCATCC
GTGAGATTAAAAAACGTCAACCAGAGTCATTTCAGTTGCAACAAAATCCAGCACTAGATATTGTTGAAACCAAAAAGTCA
TCAGAACCCTGTAAATCAATATTTCCCTCTGGCTCTCAGCTCAATCAGGTCTTTAAATTTATTGAGTCTAACTACGACCA
ATCCATTGGCTTACGTGACGTAGCCCAAGCAGTTGGTTACTCCCCAGCTTATTTAACTGATCTAGTCCGGCGACATACAG
GGGAAACTGTCAATCATTGGATTATTAAGCGACGGATGGTAGCTGCACGAACATTACTCCTAGAAACTGACCAGTGTGTG
AATCAAATTGCTGAGGCTGTGGGGTATCAACACGAGGGTCATTTCTTCCGTCAGTTTCGCCAGTACCATGACACTACGCC
CCATGCTTGGCGAAAAATGCAGCGTCAGGTGGCGACATCACAATAG

Upstream 100 bases:

>100_bases
AATGTAATCTAATAGATACATATATTCACGTAAAACCCTGAATTCTACAGTTAAATAACCTTAAGGCTCATTAGGTTCAC
TTAGAAATTCAGTAATTACA

Downstream 100 bases:

>100_bases
AGACGAAAAAATTGCGAGTCCGATAAAAAGATTGTGCATTGTTTTCCCATCTCGTGTCTTCTAACCTGCTAAATATCTAT
TAGTCTCCCTTTTTATCAGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MSRTMVFDSCISEQHTYQVTQQLEKELRLTNLLMDCVTDAVFWVKPNTRILYVNDAACSLVGYSREELLCMSIQYLNLEF
LMEVWLQHWETIKQKGSLYFESLYKTQAGLSLPVQTTVTYMEEDGREYGCISIREIKKRQPESFQLQQNPALDIVETKKS
SEPCKSIFPSGSQLNQVFKFIESNYDQSIGLRDVAQAVGYSPAYLTDLVRRHTGETVNHWIIKRRMVAARTLLLETDQCV
NQIAEAVGYQHEGHFFRQFRQYHDTTPHAWRKMQRQVATSQ

Sequences:

>Translated_281_residues
MSRTMVFDSCISEQHTYQVTQQLEKELRLTNLLMDCVTDAVFWVKPNTRILYVNDAACSLVGYSREELLCMSIQYLNLEF
LMEVWLQHWETIKQKGSLYFESLYKTQAGLSLPVQTTVTYMEEDGREYGCISIREIKKRQPESFQLQQNPALDIVETKKS
SEPCKSIFPSGSQLNQVFKFIESNYDQSIGLRDVAQAVGYSPAYLTDLVRRHTGETVNHWIIKRRMVAARTLLLETDQCV
NQIAEAVGYQHEGHFFRQFRQYHDTTPHAWRKMQRQVATSQ
>Mature_280_residues
SRTMVFDSCISEQHTYQVTQQLEKELRLTNLLMDCVTDAVFWVKPNTRILYVNDAACSLVGYSREELLCMSIQYLNLEFL
MEVWLQHWETIKQKGSLYFESLYKTQAGLSLPVQTTVTYMEEDGREYGCISIREIKKRQPESFQLQQNPALDIVETKKSS
EPCKSIFPSGSQLNQVFKFIESNYDQSIGLRDVAQAVGYSPAYLTDLVRRHTGETVNHWIIKRRMVAARTLLLETDQCVN
QIAEAVGYQHEGHFFRQFRQYHDTTPHAWRKMQRQVATSQ

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790559, Length=103, Percent_Identity=30.0970873786408, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32760; Mature: 32629

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS50112 PAS ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTMVFDSCISEQHTYQVTQQLEKELRLTNLLMDCVTDAVFWVKPNTRILYVNDAACSL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCHHHH
VGYSREELLCMSIQYLNLEFLMEVWLQHWETIKQKGSLYFESLYKTQAGLSLPVQTTVTY
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHH
MEEDGREYGCISIREIKKRQPESFQLQQNPALDIVETKKSSEPCKSIFPSGSQLNQVFKF
HHHCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCEECCCCCCCHHHHCCCCHHHHHHHHH
IESNYDQSIGLRDVAQAVGYSPAYLTDLVRRHTGETVNHWIIKRRMVAARTLLLETDQCV
HHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NQIAEAVGYQHEGHFFRQFRQYHDTTPHAWRKMQRQVATSQ
HHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SRTMVFDSCISEQHTYQVTQQLEKELRLTNLLMDCVTDAVFWVKPNTRILYVNDAACSL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCHHHH
VGYSREELLCMSIQYLNLEFLMEVWLQHWETIKQKGSLYFESLYKTQAGLSLPVQTTVTY
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHH
MEEDGREYGCISIREIKKRQPESFQLQQNPALDIVETKKSSEPCKSIFPSGSQLNQVFKF
HHHCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCEECCCCCCCHHHHCCCCHHHHHHHHH
IESNYDQSIGLRDVAQAVGYSPAYLTDLVRRHTGETVNHWIIKRRMVAARTLLLETDQCV
HHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NQIAEAVGYQHEGHFFRQFRQYHDTTPHAWRKMQRQVATSQ
HHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]