| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
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The map label for this gene is comE [H]
Identifier: 17229475
GI number: 17229475
Start: 2371483
End: 2373879
Strand: Reverse
Name: comE [H]
Synonym: all1983
Alternate gene names: 17229475
Gene position: 2373879-2371483 (Counterclockwise)
Preceding gene: 17229476
Following gene: 17229473
Centisome position: 37.01
GC content: 42.43
Gene sequence:
>2397_bases ATGAACTATACTTCACGAGAAGTATCAAGAAGATTGCCATCAGGTGCTTGTGCAAGAAGTCTTATGATTCAAACTAGTGG TGTCATTATCTGCCTTGGCTACATTTTAGGATTGTTATTTACGGCAGTTCCGGGGAGTGGAGTGTGGATTTTAGTCTTAG GAATTGTGTGTGCAGTCTTTTTGAGAAGAGGGGCAAAACCACAACGACTTCTACAAAAATCAGCAAATGATGTAGTGTCT AATAGTTTACTCCTAACTCCGCTTCCACGAGTGTGGTTAATTGCTGGGTTGGTGGGGTTGTTAGCAAGTTTTTATTTTCA ATGGCGTGTACCTCAACCAACAGCAACGGATATTAGTAAATTTGTCTCATCAGATAGCAATAATCAAGAACAACTGGTGA TTGTGCGTGGGGAAGTCGCTAGTAATCCTCGCTTGACTCGCAGCCAAAGGGGGCAATTTTGGTTGCAAGTATCTCAGTTA GATGAAGTGAGAAATCAGAAAGATACGAAAGAAACTCAAAAAGGGGCGAGTGGTAAGTTATATGTAACTGTGCCTATACT CAAGGCTACTGGTTTACATCCTGGGCAAGAAATTGCGGTGACAGGGGTGTTGTATAAACCGAAGGCTGCATCAAACCCTG GGGCTTTTGATTTTAAAAAGTATCTGGAGCGGGAGGGGACATTTGCTGGCTTGATGGGACGGCAGATTAATATTTTGGAT GAAGAGGAACAATGGGGATGGTGGCAAATTCGAGAACGGATTGTGCGATCGCAAGTTATGGGGTTAGATATACCAGAAGG GCCTCTTGTCAGTGCAATGGTGCTGGGTAGCAAAGCTGTTGATTTACCCTACGATATCCGCGATTTATTTGTACAAGCAG GATTAGCCCATGCTTTGGCAGCTTCAGGGTTTCAAACTTCACTGATTTTAAGTGTCATTTTACAGCTAACTAAGCGGGCA AAAAAGGTGACTCAGGTTAGCCTGGGTGCGTTGGCTTTGATTATTTTCCTGAGTTTAACGGGATTTCAGCCTGCTGTACT TAGGGCTGTGATTATGGGTTTTGCTGCTTTGGTGGGCTTGGCATTAGATAGGAAAGTGAAACAGTTGGGTTCACTGTTAT TAGCCGCCACTATATTATTAGTATTTAATCCTTTGTGGATTTGGGATTTAGGTTTTCAGTTAAGTTTTTTAGCGACTTTG GGATTAGTGGTGAGTGTCCCGGCGATTACTAGTTTTTTGGGTTGGATTCCCCCAGCGATCGCCTCTTTGATTTCCGTTCC TCTGGCTGCTACAATTTGGACTCTACCGTTGCAACTATTCGTGTTTGGGGTTGTGCCTGCTTATAGTTTGCTACTAAATA TTATTACCACACCGTTAATCTCAATTATTAGCATTGGTGGAATTATCAGCGCGATGTTTGCATTAATCTTGTCTGGTGCT GGTAGCTTTGTGGCAGGTTTTCTCCACTATCCCACTGATTGGTTAATTAAATTAGTCGAAATTTTCAGCCAGTTACCAGG GAATTCATTGATTGTAGGTAGCATCTCAACTTGGCAGTTATTGGCAATTTATGGACTAGTTTTCCTGGTTTGGTTAGTAA ACTGGTGGCAGAAACGCTGGTGGTTTGCAGGTTTAATGGCTATTGGCTTGGTTTTATTTCCCGCTTGGCATTCTGCAAGT ACGTTATCGCGGGTTACGGTATTAGAAGCTGGGGCAGAACCTGTGGTGGTTGTGCAAGATAGAGGTACAGTTACTTTAAT TAATAGTGGGGATGAGGGTACAGGACGCTTTACGATTTTACCCTTTTTACAGCAGCAAGGTGTGAATCAAATTGATTGGG CGATCGCTACTGATTTTCAACGCAATAATAATGATGCTTGGTTAGAAGTTCTGCAACGTTTGGCAATTAAAAACTTTTAC GCCTACGCTACCAATAAGGAAAATTCTCTAGCAGATCAAGCCATACCTCAAATCTTACAAAAGCAAAAGGGCATTTATCA ACTTTTACCTGTTGGGCAAACTATTAATCTTGGTTCTACGGTAGCCCAATTAATCAACGAACAACCAATGATGCAGTTGC AAATGTTAGGCCAGAGTTGGTTATTGGTGGGGGATGTGGAACCGAAAGAGGTAGAAAGAATTATGAAAGCTGGAGGTTGG CCTAGTCCTCAAGTTTTGTGGTGTAATGCTGAGTCTTTAAAGGATTTAGTCATGATGCTCAAACCGCAGGTGGCGATCGC TTCTTCTGGTAGTCTTGAGAGTACGGTCTTATCTGAACTCAGTAAAACATCAACTAAAGTTTTCGTGACAGCCCAAGATG GGGCTATTCAATGGATGCCCAATGGTGAGTTTGAATCGTTTACTCAGGTGTCTGAGAGTAAGTCTTCCGTTTTGTAA
Upstream 100 bases:
>100_bases ATGCTGTTCTAGGCTTTAATTTGGGTATTTCTCTGTGATGTGTTGATACAACATTTATAATTCAAAGCCTGCACGCGCGG GCTTTGTTTGTATAAACCTG
Downstream 100 bases:
>100_bases TATTTGGTTTTATTTCACACCGAAACAAGGAAAGTTGATTAAAGATTTTGGGCTAAAGCTACAGCACCCCATAATGGTGC ATCGTCGGCTAATGCTGCCG
Product: competence protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 798; Mature: 798
Protein sequence:
>798_residues MNYTSREVSRRLPSGACARSLMIQTSGVIICLGYILGLLFTAVPGSGVWILVLGIVCAVFLRRGAKPQRLLQKSANDVVS NSLLLTPLPRVWLIAGLVGLLASFYFQWRVPQPTATDISKFVSSDSNNQEQLVIVRGEVASNPRLTRSQRGQFWLQVSQL DEVRNQKDTKETQKGASGKLYVTVPILKATGLHPGQEIAVTGVLYKPKAASNPGAFDFKKYLEREGTFAGLMGRQINILD EEEQWGWWQIRERIVRSQVMGLDIPEGPLVSAMVLGSKAVDLPYDIRDLFVQAGLAHALAASGFQTSLILSVILQLTKRA KKVTQVSLGALALIIFLSLTGFQPAVLRAVIMGFAALVGLALDRKVKQLGSLLLAATILLVFNPLWIWDLGFQLSFLATL GLVVSVPAITSFLGWIPPAIASLISVPLAATIWTLPLQLFVFGVVPAYSLLLNIITTPLISIISIGGIISAMFALILSGA GSFVAGFLHYPTDWLIKLVEIFSQLPGNSLIVGSISTWQLLAIYGLVFLVWLVNWWQKRWWFAGLMAIGLVLFPAWHSAS TLSRVTVLEAGAEPVVVVQDRGTVTLINSGDEGTGRFTILPFLQQQGVNQIDWAIATDFQRNNNDAWLEVLQRLAIKNFY AYATNKENSLADQAIPQILQKQKGIYQLLPVGQTINLGSTVAQLINEQPMMQLQMLGQSWLLVGDVEPKEVERIMKAGGW PSPQVLWCNAESLKDLVMMLKPQVAIASSGSLESTVLSELSKTSTKVFVTAQDGAIQWMPNGEFESFTQVSESKSSVL
Sequences:
>Translated_798_residues MNYTSREVSRRLPSGACARSLMIQTSGVIICLGYILGLLFTAVPGSGVWILVLGIVCAVFLRRGAKPQRLLQKSANDVVS NSLLLTPLPRVWLIAGLVGLLASFYFQWRVPQPTATDISKFVSSDSNNQEQLVIVRGEVASNPRLTRSQRGQFWLQVSQL DEVRNQKDTKETQKGASGKLYVTVPILKATGLHPGQEIAVTGVLYKPKAASNPGAFDFKKYLEREGTFAGLMGRQINILD EEEQWGWWQIRERIVRSQVMGLDIPEGPLVSAMVLGSKAVDLPYDIRDLFVQAGLAHALAASGFQTSLILSVILQLTKRA KKVTQVSLGALALIIFLSLTGFQPAVLRAVIMGFAALVGLALDRKVKQLGSLLLAATILLVFNPLWIWDLGFQLSFLATL GLVVSVPAITSFLGWIPPAIASLISVPLAATIWTLPLQLFVFGVVPAYSLLLNIITTPLISIISIGGIISAMFALILSGA GSFVAGFLHYPTDWLIKLVEIFSQLPGNSLIVGSISTWQLLAIYGLVFLVWLVNWWQKRWWFAGLMAIGLVLFPAWHSAS TLSRVTVLEAGAEPVVVVQDRGTVTLINSGDEGTGRFTILPFLQQQGVNQIDWAIATDFQRNNNDAWLEVLQRLAIKNFY AYATNKENSLADQAIPQILQKQKGIYQLLPVGQTINLGSTVAQLINEQPMMQLQMLGQSWLLVGDVEPKEVERIMKAGGW PSPQVLWCNAESLKDLVMMLKPQVAIASSGSLESTVLSELSKTSTKVFVTAQDGAIQWMPNGEFESFTQVSESKSSVL >Mature_798_residues MNYTSREVSRRLPSGACARSLMIQTSGVIICLGYILGLLFTAVPGSGVWILVLGIVCAVFLRRGAKPQRLLQKSANDVVS NSLLLTPLPRVWLIAGLVGLLASFYFQWRVPQPTATDISKFVSSDSNNQEQLVIVRGEVASNPRLTRSQRGQFWLQVSQL DEVRNQKDTKETQKGASGKLYVTVPILKATGLHPGQEIAVTGVLYKPKAASNPGAFDFKKYLEREGTFAGLMGRQINILD EEEQWGWWQIRERIVRSQVMGLDIPEGPLVSAMVLGSKAVDLPYDIRDLFVQAGLAHALAASGFQTSLILSVILQLTKRA KKVTQVSLGALALIIFLSLTGFQPAVLRAVIMGFAALVGLALDRKVKQLGSLLLAATILLVFNPLWIWDLGFQLSFLATL GLVVSVPAITSFLGWIPPAIASLISVPLAATIWTLPLQLFVFGVVPAYSLLLNIITTPLISIISIGGIISAMFALILSGA GSFVAGFLHYPTDWLIKLVEIFSQLPGNSLIVGSISTWQLLAIYGLVFLVWLVNWWQKRWWFAGLMAIGLVLFPAWHSAS TLSRVTVLEAGAEPVVVVQDRGTVTLINSGDEGTGRFTILPFLQQQGVNQIDWAIATDFQRNNNDAWLEVLQRLAIKNFY AYATNKENSLADQAIPQILQKQKGIYQLLPVGQTINLGSTVAQLINEQPMMQLQMLGQSWLLVGDVEPKEVERIMKAGGW PSPQVLWCNAESLKDLVMMLKPQVAIASSGSLESTVLSELSKTSTKVFVTAQDGAIQWMPNGEFESFTQVSESKSSVL
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 87280; Mature: 87280
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYTSREVSRRLPSGACARSLMIQTSGVIICLGYILGLLFTAVPGSGVWILVLGIVCAVF CCCCHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LRRGAKPQRLLQKSANDVVSNSLLLTPLPRVWLIAGLVGLLASFYFQWRVPQPTATDISK HHCCCCHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHH FVSSDSNNQEQLVIVRGEVASNPRLTRSQRGQFWLQVSQLDEVRNQKDTKETQKGASGKL HHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCHHHHHCCCCCEE YVTVPILKATGLHPGQEIAVTGVLYKPKAASNPGAFDFKKYLEREGTFAGLMGRQINILD EEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEHHCCCEEEEEC EEEQWGWWQIRERIVRSQVMGLDIPEGPLVSAMVLGSKAVDLPYDIRDLFVQAGLAHALA CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH ASGFQTSLILSVILQLTKRAKKVTQVSLGALALIIFLSLTGFQPAVLRAVIMGFAALVGL HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH ALDRKVKQLGSLLLAATILLVFNPLWIWDLGFQLSFLATLGLVVSVPAITSFLGWIPPAI HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASLISVPLAATIWTLPLQLFVFGVVPAYSLLLNIITTPLISIISIGGIISAMFALILSGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GSFVAGFLHYPTDWLIKLVEIFSQLPGNSLIVGSISTWQLLAIYGLVFLVWLVNWWQKRW HHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH WFAGLMAIGLVLFPAWHSASTLSRVTVLEAGAEPVVVVQDRGTVTLINSGDEGTGRFTIL HHHHHHHHHHHHHCCCCCHHHHHHHHHEECCCCCEEEEECCCCEEEEECCCCCCCCEEEE PFLQQQGVNQIDWAIATDFQRNNNDAWLEVLQRLAIKNFYAYATNKENSLADQAIPQILQ EHHHHCCCCHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHH KQKGIYQLLPVGQTINLGSTVAQLINEQPMMQLQMLGQSWLLVGDVEPKEVERIMKAGGW HCCCCEEEECCCCCCCCHHHHHHHHCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCC PSPQVLWCNAESLKDLVMMLKPQVAIASSGSLESTVLSELSKTSTKVFVTAQDGAIQWMP CCCCEEEECHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCEEEECC NGEFESFTQVSESKSSVL CCCHHHHHHHHHHHHCCC >Mature Secondary Structure MNYTSREVSRRLPSGACARSLMIQTSGVIICLGYILGLLFTAVPGSGVWILVLGIVCAVF CCCCHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LRRGAKPQRLLQKSANDVVSNSLLLTPLPRVWLIAGLVGLLASFYFQWRVPQPTATDISK HHCCCCHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHH FVSSDSNNQEQLVIVRGEVASNPRLTRSQRGQFWLQVSQLDEVRNQKDTKETQKGASGKL HHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCHHHHHCCCCCEE YVTVPILKATGLHPGQEIAVTGVLYKPKAASNPGAFDFKKYLEREGTFAGLMGRQINILD EEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEHHCCCEEEEEC EEEQWGWWQIRERIVRSQVMGLDIPEGPLVSAMVLGSKAVDLPYDIRDLFVQAGLAHALA CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH ASGFQTSLILSVILQLTKRAKKVTQVSLGALALIIFLSLTGFQPAVLRAVIMGFAALVGL HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH ALDRKVKQLGSLLLAATILLVFNPLWIWDLGFQLSFLATLGLVVSVPAITSFLGWIPPAI HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASLISVPLAATIWTLPLQLFVFGVVPAYSLLLNIITTPLISIISIGGIISAMFALILSGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GSFVAGFLHYPTDWLIKLVEIFSQLPGNSLIVGSISTWQLLAIYGLVFLVWLVNWWQKRW HHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH WFAGLMAIGLVLFPAWHSASTLSRVTVLEAGAEPVVVVQDRGTVTLINSGDEGTGRFTIL HHHHHHHHHHHHHCCCCCHHHHHHHHHEECCCCCEEEEECCCCEEEEECCCCCCCCEEEE PFLQQQGVNQIDWAIATDFQRNNNDAWLEVLQRLAIKNFYAYATNKENSLADQAIPQILQ EHHHHCCCCHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHH KQKGIYQLLPVGQTINLGSTVAQLINEQPMMQLQMLGQSWLLVGDVEPKEVERIMKAGGW HCCCCEEEECCCCCCCCHHHHHHHHCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCC PSPQVLWCNAESLKDLVMMLKPQVAIASSGSLESTVLSELSKTSTKVFVTAQDGAIQWMP CCCCEEEECHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCEEEECC NGEFESFTQVSESKSSVL CCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]