| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
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The map label for this gene is aphA [H]
Identifier: 17229458
GI number: 17229458
Start: 2348635
End: 2351274
Strand: Direct
Name: aphA [H]
Synonym: alr1966
Alternate gene names: 17229458
Gene position: 2348635-2351274 (Clockwise)
Preceding gene: 17229457
Following gene: 17229459
Centisome position: 36.62
GC content: 44.51
Gene sequence:
>2640_bases ATGAAATCCTCTTTGCAGAATGAACAGGCGAGACTTGCAGCTTTACGCCAATATCAAATTCTAGATACTGAACCGGAGGA AGTTTATGACAATCTGGCTCAGTTAGCTGCGTTTATTTGCGGCACACCCATAGCTTTAGTCAATTTTATTGATGAAAATC GTCAATGGTTTAAAGCCAAACTGGGTATAGACGTACCAGAAATGCCCCGGAATGTGGGTTTATCCTATCTTTGCCAGGAA AAGCAAGATGTTGTTGTTATACCGGATACTTTAGCAGACGATCGCTTCATTGATAACCCAGTCGTTAAATCCTACCCTCA TGTGAGATTTTACGCAGGTGTACCACTGTTGACACAAGAGGGTCATTTTTTGGGAACCCTCTGCGTCATTGACAGGATAC CAAAACAACTTAATCAGCCACAAATTGATGCACTGGTTGCCTTAAGTCGCCTAGTCATTAGTCAGCTAGAACTGAGGCGC AATGTCGCCCATGTATCTCAGATTAGCGAACTGTTGATTAAGCATGAACAAACGGCGCGTGCGGAGTCGGAAACAGCTAG AGAGCAGATTGCCAATATACTGGAAAGTATTACTGACGCGTTTTTTGCCATAGATTACGAATGGCGATTTACCTACGTCA ATGGTCAAGCTTCCAAGTTGTTAGAGAAAACACCAGATGAGCTATTAGGTAAAAGTATCTGGGAAGTATTTTCAGATCAC GTAGATTCAACATTTTATCGTGAAACTAGACGCGCGATCGCCAAACAAATCAGTGTCAAGTTTGAGGAGTTTTACCCGCC ACTGCACAAATGGTTTGCCATTCATGCTTACCCAAGTAAAGACGGCTTATCTGTTTATTTCCAAGATATTAGCGAACGTC GATATACAGCCGCCGCCCTGCGCGAGAGTGAGGAACGTTGGCAGTTAGCTTTAATTGGTAACAATGATGGTATTTGGGAT TGGAACATCAAAACTGATGAAGTCTTCTTCTCCTCACGCTGGAAACAAATGTTGGGGTATGAAGACGACGAAATTACTAA CCACATTGATGAATGGTCAAAGCGGGTGCATCCTGATGATATAGATTGGGTAATGCAAGCGGTTCAAGACCATTTGGCGA AAAAAACTTCCCATTACGTTACCGAACATCGTGTACTGTGCAAAGATGGCAGTTATAAATGGATTTTAGACCGAGGTCAG GCGCTTTGGGATGAGGCGGGTAATGCGTTACGGATGGTAGGTTCCCATACAGATATTACGGAACGCAAACAAACAGAAGA GGAATTAAAAAAACAGAATTTGCGATCGCAATTATTCGCGGAAATCACCGTCAAAATTCGGGAAACCCTTGATATTGAAG AGATTCTGCATACATCAGTTCAAGAAGTGCAGAAACTTTTGCAAGCAGACCGAGTATTGATTTTCCGACTCTGGGCCGAT GGTTCGGGAACAGTAGTACAAGAATCAGTGTTACCTGGCTGGCCTGTGGTACTGGGACAAAATATCCTTGACCCTTGTTT TCAAAAAGATTACGTTGATAAATATCGCCAAGGGCGAGTCAGTGCCATAGTAGATGTTACTAAAGCAGATATTCAAGAAT GTCATCGAGAATTTTTGCAAGGATTTGGCGTAAAAGCTAACCTCGTAGTCCCTATTCTCAATCGGGATGGCATTTGGGGT TTGCTGATTGCCCATCAGTGTACAAATCCTCGCCATTGGAATAACTTTGAGTTGGAATTATTGCAACAACTAGCCAACCA AATGGGAATTGCTTTATCCCAAGGACAATTATTGGAACTACAAACTAGGCAAAGTCAAGAACTCGCTCGTTCTAATACTG AACTGGAAAATTTCGCCTATGTAGCCTCCCATGATTTACAAGAACCCTTGCGGATGGTGACTAGTTATTTACAGTTATTG GAAAGGAGGTATAAAAATCAACTAGACAGTAACGCTGAACAGTTCATCACCTACGCCGTTGATGGTGCTAGGCGGATGCA GACCTTAATCAACGACCTGTTGAATTATTCACGCGTTACCACCCGTGGACAACCATTTGTCGCCGTTGACTGTGGCGTTA TTTTACAACGAGCGATCGCCAATCTCAAAATAGCGATCGAAGAATCTGGTGCAGTTGTTACCCATGACCCCTTACCCACA GTCATGGCAGACCCTACCCAACTAACCCAGATTTTTCAAAACCTCATCGCCAACGCCATCAAATTTCGCCGAGAAGCAGC ACCAGAAATTCATGTTGGAGTAGTAGAGGCAGGGGGCAGGGGGCAGGAAGAGAAGTCGCAAGGAGGGTTTCCCTCCGGGC GAACTTCGGGGGCAGGGGGAGAAAGACCCAATCCCCCCCCAGTCCCCAATCCCCAATCCCCAGTCCCCAGTCCCCATACA ACCTGGCTATTCTCAGTCCGTGATAATGGCATCGGTATAGAACCCCAATATGCAGACCGTATTTTTATCATTTTTCAACG TCTGCATGGTAGAAGTAAATATCCGGGTACAGGCATTGGTTTGGCAATTTGTAAGAAAATAATAGAGCGCCACGGTGGTC ATATCTGGGTGGAGTCGGAACCGGGTCAAGGCTCGACATTCTACTTCACAATTCCAGAACAAGCAGGGAAACAATCGTGA
Upstream 100 bases:
>100_bases ATAAGATAGTTCGACTTTGTATTTCTGAAATAAAACTTTCAGATAATTTCGTATCTTTTTTTAACAAAAATTTATATCTG GATTTTTTCTCCAAAATTTA
Downstream 100 bases:
>100_bases ATATGACAACAGCGATTATGCCAATTGAGGTTTTGTTGGTAGAAGATAACCCAGGAGATGTAGAACTCACCCGTATTGCT TTAGAAGATAGCAAAATTTC
Product: two-component sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 879; Mature: 879
Protein sequence:
>879_residues MKSSLQNEQARLAALRQYQILDTEPEEVYDNLAQLAAFICGTPIALVNFIDENRQWFKAKLGIDVPEMPRNVGLSYLCQE KQDVVVIPDTLADDRFIDNPVVKSYPHVRFYAGVPLLTQEGHFLGTLCVIDRIPKQLNQPQIDALVALSRLVISQLELRR NVAHVSQISELLIKHEQTARAESETAREQIANILESITDAFFAIDYEWRFTYVNGQASKLLEKTPDELLGKSIWEVFSDH VDSTFYRETRRAIAKQISVKFEEFYPPLHKWFAIHAYPSKDGLSVYFQDISERRYTAAALRESEERWQLALIGNNDGIWD WNIKTDEVFFSSRWKQMLGYEDDEITNHIDEWSKRVHPDDIDWVMQAVQDHLAKKTSHYVTEHRVLCKDGSYKWILDRGQ ALWDEAGNALRMVGSHTDITERKQTEEELKKQNLRSQLFAEITVKIRETLDIEEILHTSVQEVQKLLQADRVLIFRLWAD GSGTVVQESVLPGWPVVLGQNILDPCFQKDYVDKYRQGRVSAIVDVTKADIQECHREFLQGFGVKANLVVPILNRDGIWG LLIAHQCTNPRHWNNFELELLQQLANQMGIALSQGQLLELQTRQSQELARSNTELENFAYVASHDLQEPLRMVTSYLQLL ERRYKNQLDSNAEQFITYAVDGARRMQTLINDLLNYSRVTTRGQPFVAVDCGVILQRAIANLKIAIEESGAVVTHDPLPT VMADPTQLTQIFQNLIANAIKFRREAAPEIHVGVVEAGGRGQEEKSQGGFPSGRTSGAGGERPNPPPVPNPQSPVPSPHT TWLFSVRDNGIGIEPQYADRIFIIFQRLHGRSKYPGTGIGLAICKKIIERHGGHIWVESEPGQGSTFYFTIPEQAGKQS
Sequences:
>Translated_879_residues MKSSLQNEQARLAALRQYQILDTEPEEVYDNLAQLAAFICGTPIALVNFIDENRQWFKAKLGIDVPEMPRNVGLSYLCQE KQDVVVIPDTLADDRFIDNPVVKSYPHVRFYAGVPLLTQEGHFLGTLCVIDRIPKQLNQPQIDALVALSRLVISQLELRR NVAHVSQISELLIKHEQTARAESETAREQIANILESITDAFFAIDYEWRFTYVNGQASKLLEKTPDELLGKSIWEVFSDH VDSTFYRETRRAIAKQISVKFEEFYPPLHKWFAIHAYPSKDGLSVYFQDISERRYTAAALRESEERWQLALIGNNDGIWD WNIKTDEVFFSSRWKQMLGYEDDEITNHIDEWSKRVHPDDIDWVMQAVQDHLAKKTSHYVTEHRVLCKDGSYKWILDRGQ ALWDEAGNALRMVGSHTDITERKQTEEELKKQNLRSQLFAEITVKIRETLDIEEILHTSVQEVQKLLQADRVLIFRLWAD GSGTVVQESVLPGWPVVLGQNILDPCFQKDYVDKYRQGRVSAIVDVTKADIQECHREFLQGFGVKANLVVPILNRDGIWG LLIAHQCTNPRHWNNFELELLQQLANQMGIALSQGQLLELQTRQSQELARSNTELENFAYVASHDLQEPLRMVTSYLQLL ERRYKNQLDSNAEQFITYAVDGARRMQTLINDLLNYSRVTTRGQPFVAVDCGVILQRAIANLKIAIEESGAVVTHDPLPT VMADPTQLTQIFQNLIANAIKFRREAAPEIHVGVVEAGGRGQEEKSQGGFPSGRTSGAGGERPNPPPVPNPQSPVPSPHT TWLFSVRDNGIGIEPQYADRIFIIFQRLHGRSKYPGTGIGLAICKKIIERHGGHIWVESEPGQGSTFYFTIPEQAGKQS >Mature_879_residues MKSSLQNEQARLAALRQYQILDTEPEEVYDNLAQLAAFICGTPIALVNFIDENRQWFKAKLGIDVPEMPRNVGLSYLCQE KQDVVVIPDTLADDRFIDNPVVKSYPHVRFYAGVPLLTQEGHFLGTLCVIDRIPKQLNQPQIDALVALSRLVISQLELRR NVAHVSQISELLIKHEQTARAESETAREQIANILESITDAFFAIDYEWRFTYVNGQASKLLEKTPDELLGKSIWEVFSDH VDSTFYRETRRAIAKQISVKFEEFYPPLHKWFAIHAYPSKDGLSVYFQDISERRYTAAALRESEERWQLALIGNNDGIWD WNIKTDEVFFSSRWKQMLGYEDDEITNHIDEWSKRVHPDDIDWVMQAVQDHLAKKTSHYVTEHRVLCKDGSYKWILDRGQ ALWDEAGNALRMVGSHTDITERKQTEEELKKQNLRSQLFAEITVKIRETLDIEEILHTSVQEVQKLLQADRVLIFRLWAD GSGTVVQESVLPGWPVVLGQNILDPCFQKDYVDKYRQGRVSAIVDVTKADIQECHREFLQGFGVKANLVVPILNRDGIWG LLIAHQCTNPRHWNNFELELLQQLANQMGIALSQGQLLELQTRQSQELARSNTELENFAYVASHDLQEPLRMVTSYLQLL ERRYKNQLDSNAEQFITYAVDGARRMQTLINDLLNYSRVTTRGQPFVAVDCGVILQRAIANLKIAIEESGAVVTHDPLPT VMADPTQLTQIFQNLIANAIKFRREAAPEIHVGVVEAGGRGQEEKSQGGFPSGRTSGAGGERPNPPPVPNPQSPVPSPHT TWLFSVRDNGIGIEPQYADRIFIIFQRLHGRSKYPGTGIGLAICKKIIERHGGHIWVESEPGQGSTFYFTIPEQAGKQS
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 100083; Mature: 100083
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSSLQNEQARLAALRQYQILDTEPEEVYDNLAQLAAFICGTPIALVNFIDENRQWFKAK CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHH LGIDVPEMPRNVGLSYLCQEKQDVVVIPDTLADDRFIDNPVVKSYPHVRFYAGVPLLTQE CCCCCCCCCHHCCHHHHCCCCCCEEEECCCCCCCCCCCCCHHHCCCCEEEEECCCEEECC GHFLGTLCVIDRIPKQLNQPQIDALVALSRLVISQLELRRNVAHVSQISELLIKHEQTAR CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AESETAREQIANILESITDAFFAIDYEWRFTYVNGQASKLLEKTPDELLGKSIWEVFSDH HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHH VDSTFYRETRRAIAKQISVKFEEFYPPLHKWFAIHAYPSKDGLSVYFQDISERRYTAAAL HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHH RESEERWQLALIGNNDGIWDWNIKTDEVFFSSRWKQMLGYEDDEITNHIDEWSKRVHPDD HCCCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCH IDWVMQAVQDHLAKKTSHYVTEHRVLCKDGSYKWILDRGQALWDEAGNALRMVGSHTDIT HHHHHHHHHHHHHHHHHHHHHHCEEEECCCCEEEEECCCHHHHHHCCCEEEECCCCCCHH ERKQTEEELKKQNLRSQLFAEITVKIRETLDIEEILHTSVQEVQKLLQADRVLIFRLWAD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC GSGTVVQESVLPGWPVVLGQNILDPCFQKDYVDKYRQGRVSAIVDVTKADIQECHREFLQ CCCCEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH GFGVKANLVVPILNRDGIWGLLIAHQCTNPRHWNNFELELLQQLANQMGIALSQGQLLEL HCCCCEEEEEEEECCCCCEEEEEEHHCCCCCCCCCHHHHHHHHHHHHHCEEECCCCEEEH QTRQSQELARSNTELENFAYVASHDLQEPLRMVTSYLQLLERRYKNQLDSNAEQFITYAV HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH DGARRMQTLINDLLNYSRVTTRGQPFVAVDCGVILQRAIANLKIAIEESGAVVTHDPLPT HHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHEEEEEECCCCEEECCCCCC VMADPTQLTQIFQNLIANAIKFRREAAPEIHVGVVEAGGRGQEEKSQGGFPSGRTSGAGG CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCC ERPNPPPVPNPQSPVPSPHTTWLFSVRDNGIGIEPQYADRIFIIFQRLHGRSKYPGTGIG CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH LAICKKIIERHGGHIWVESEPGQGSTFYFTIPEQAGKQS HHHHHHHHHHCCCEEEEECCCCCCCEEEEECCHHCCCCC >Mature Secondary Structure MKSSLQNEQARLAALRQYQILDTEPEEVYDNLAQLAAFICGTPIALVNFIDENRQWFKAK CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHH LGIDVPEMPRNVGLSYLCQEKQDVVVIPDTLADDRFIDNPVVKSYPHVRFYAGVPLLTQE CCCCCCCCCHHCCHHHHCCCCCCEEEECCCCCCCCCCCCCHHHCCCCEEEEECCCEEECC GHFLGTLCVIDRIPKQLNQPQIDALVALSRLVISQLELRRNVAHVSQISELLIKHEQTAR CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AESETAREQIANILESITDAFFAIDYEWRFTYVNGQASKLLEKTPDELLGKSIWEVFSDH HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHH VDSTFYRETRRAIAKQISVKFEEFYPPLHKWFAIHAYPSKDGLSVYFQDISERRYTAAAL HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHH RESEERWQLALIGNNDGIWDWNIKTDEVFFSSRWKQMLGYEDDEITNHIDEWSKRVHPDD HCCCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCH IDWVMQAVQDHLAKKTSHYVTEHRVLCKDGSYKWILDRGQALWDEAGNALRMVGSHTDIT HHHHHHHHHHHHHHHHHHHHHHCEEEECCCCEEEEECCCHHHHHHCCCEEEECCCCCCHH ERKQTEEELKKQNLRSQLFAEITVKIRETLDIEEILHTSVQEVQKLLQADRVLIFRLWAD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC GSGTVVQESVLPGWPVVLGQNILDPCFQKDYVDKYRQGRVSAIVDVTKADIQECHREFLQ CCCCEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH GFGVKANLVVPILNRDGIWGLLIAHQCTNPRHWNNFELELLQQLANQMGIALSQGQLLEL HCCCCEEEEEEEECCCCCEEEEEEHHCCCCCCCCCHHHHHHHHHHHHHCEEECCCCEEEH QTRQSQELARSNTELENFAYVASHDLQEPLRMVTSYLQLLERRYKNQLDSNAEQFITYAV HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH DGARRMQTLINDLLNYSRVTTRGQPFVAVDCGVILQRAIANLKIAIEESGAVVTHDPLPT HHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHEEEEEECCCCEEECCCCCC VMADPTQLTQIFQNLIANAIKFRREAAPEIHVGVVEAGGRGQEEKSQGGFPSGRTSGAGG CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCC ERPNPPPVPNPQSPVPSPHTTWLFSVRDNGIGIEPQYADRIFIIFQRLHGRSKYPGTGIG CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH LAICKKIIERHGGHIWVESEPGQGSTFYFTIPEQAGKQS HHHHHHHHHHCCCEEEEECCCCCCCEEEEECCHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]