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The map label for this gene is xyn11A [H]

Identifier: 17229285

GI number: 17229285

Start: 2155893

End: 2156765

Strand: Direct

Name: xyn11A [H]

Synonym: alr1793

Alternate gene names: 17229285

Gene position: 2155893-2156765 (Clockwise)

Preceding gene: 17229284

Following gene: 17229286

Centisome position: 33.61

GC content: 42.27

Gene sequence:

>873_bases
GTGAGTTTTGGGAATCTTGACATGACCAACAACCACCTGAAAACAGAAAAATCTCTTGGCGTGATGGCGATCGCCACTTT
TTTGGTAACTTGTTCTATTACAGTGGGTACTCTTTTGGCCTTCCACAGGAACCAATCTGTAATAGTCACCCAAGATTTAC
CAGTTCCCCGCAACCAAGTCGAATCGCCAGTTAAACCCCAATCGCCGCCACCACCTAAATTAGACAAGCTGACCTTTACT
GTACCGATTCAATATCAAGGGAAAACAGTTTATAAGGTACAAACTAATAGTAACGAGAAAGTCATCGCTCTCACCTTTGA
TGATGGGCCTTGGCAAAAAACCACGCCAGAAATTTTGGAGATTCTCAAGCAAAATCAAATTAAAGCGACATTCTTTTGGG
TAGGACAAGCTATACAAGCAAATCCGGACATAGCTAAACGAGTTGTAGCTGAAGGTCACGCTATTGGTAATCATACTTGG
CATCATTGGTATAGACGCATGAATGAAGCCACAGCCAAGAGTGAAATTGAACGCACATCTGACCTAATTTACAAAACTAC
CGGGGTGAAAACTCATTTATTCCGTCCCCCTGGAGGAGTTTTAAACAATGGATTAGTCGCTTATGCTAAAAGCCAGAAAA
ACGCTGTAGTCATGTGGTCTTTGACTTCAGCCGACACTGACCCCCGTGCTAAACCTGAAGTATTTGTGAAAAACGTTGTT
AAAGGTGCAAAACCTGGTTATATAGTTTTGATGCACGATGGTGGAGGCGATCGTCAAAGAACAGTAAAAGCCCTACCACA
GATTATTAGTGGACTGAAACAGCAAGGGTATAAATTTGTGACAGTTCCCGAATTATTAGAAATGAAGCCGTAG

Upstream 100 bases:

>100_bases
CCGGCTATCATACCCGACCGGACTATCAGCTCAAGTGATGGGATTGAGGAAATAACTAATGTCAATTTTCTCCAGATAAA
AAATATTCGCCTATCATAGG

Downstream 100 bases:

>100_bases
TAAAATTGTACATAAAATTCGTTATTACTAATTAGTAAGTGAGCGAGAAAAATTCAAATTACATGAGCAAAATATAAATT
ATCTTTCGTACTCATTACTC

Product: hypothetical protein

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase 11A; Xylanase xyn11A; Xylanase xynT; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MSFGNLDMTNNHLKTEKSLGVMAIATFLVTCSITVGTLLAFHRNQSVIVTQDLPVPRNQVESPVKPQSPPPPKLDKLTFT
VPIQYQGKTVYKVQTNSNEKVIALTFDDGPWQKTTPEILEILKQNQIKATFFWVGQAIQANPDIAKRVVAEGHAIGNHTW
HHWYRRMNEATAKSEIERTSDLIYKTTGVKTHLFRPPGGVLNNGLVAYAKSQKNAVVMWSLTSADTDPRAKPEVFVKNVV
KGAKPGYIVLMHDGGGDRQRTVKALPQIISGLKQQGYKFVTVPELLEMKP

Sequences:

>Translated_290_residues
MSFGNLDMTNNHLKTEKSLGVMAIATFLVTCSITVGTLLAFHRNQSVIVTQDLPVPRNQVESPVKPQSPPPPKLDKLTFT
VPIQYQGKTVYKVQTNSNEKVIALTFDDGPWQKTTPEILEILKQNQIKATFFWVGQAIQANPDIAKRVVAEGHAIGNHTW
HHWYRRMNEATAKSEIERTSDLIYKTTGVKTHLFRPPGGVLNNGLVAYAKSQKNAVVMWSLTSADTDPRAKPEVFVKNVV
KGAKPGYIVLMHDGGGDRQRTVKALPQIISGLKQQGYKFVTVPELLEMKP
>Mature_289_residues
SFGNLDMTNNHLKTEKSLGVMAIATFLVTCSITVGTLLAFHRNQSVIVTQDLPVPRNQVESPVKPQSPPPPKLDKLTFTV
PIQYQGKTVYKVQTNSNEKVIALTFDDGPWQKTTPEILEILKQNQIKATFFWVGQAIQANPDIAKRVVAEGHAIGNHTWH
HWYRRMNEATAKSEIERTSDLIYKTTGVKTHLFRPPGGVLNNGLVAYAKSQKNAVVMWSLTSADTDPRAKPEVFVKNVVK
GAKPGYIVLMHDGGGDRQRTVKALPQIISGLKQQGYKFVTVPELLEMKP

Specific function: Endo-acting xylanase which specifically cleaves internal linkages on the xylan backbone, releasing xylooligosaccharides. Is also probably able, via its C-terminal domain, to remove acetyl groups from acetylated xylan, and thus it is probably capable of hy

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=178, Percent_Identity=31.4606741573034, Blast_Score=76, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6323339, Length=160, Percent_Identity=31.875, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR008985
- InterPro:   IPR008979
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509 [H]

Pfam domain/function: PF03422 CBM_6; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 32266; Mature: 32134

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFGNLDMTNNHLKTEKSLGVMAIATFLVTCSITVGTLLAFHRNQSVIVTQDLPVPRNQV
CCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
ESPVKPQSPPPPKLDKLTFTVPIQYQGKTVYKVQTNSNEKVIALTFDDGPWQKTTPEILE
CCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCEEEEEEECCCCCCCCCHHHHH
ILKQNQIKATFFWVGQAIQANPDIAKRVVAEGHAIGNHTWHHWYRRMNEATAKSEIERTS
HHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DLIYKTTGVKTHLFRPPGGVLNNGLVAYAKSQKNAVVMWSLTSADTDPRAKPEVFVKNVV
HHEEEECCCEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCHHHHHHHHH
KGAKPGYIVLMHDGGGDRQRTVKALPQIISGLKQQGYKFVTVPELLEMKP
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECHHHHCCCC
>Mature Secondary Structure 
SFGNLDMTNNHLKTEKSLGVMAIATFLVTCSITVGTLLAFHRNQSVIVTQDLPVPRNQV
CCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
ESPVKPQSPPPPKLDKLTFTVPIQYQGKTVYKVQTNSNEKVIALTFDDGPWQKTTPEILE
CCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCEEEEEEECCCCCCCCCHHHHH
ILKQNQIKATFFWVGQAIQANPDIAKRVVAEGHAIGNHTWHHWYRRMNEATAKSEIERTS
HHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DLIYKTTGVKTHLFRPPGGVLNNGLVAYAKSQKNAVVMWSLTSADTDPRAKPEVFVKNVV
HHEEEECCCEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCHHHHHHHHH
KGAKPGYIVLMHDGGGDRQRTVKALPQIISGLKQQGYKFVTVPELLEMKP
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA