| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
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The map label for this gene is ybhG [C]
Identifier: 17228998
GI number: 17228998
Start: 1766957
End: 1768471
Strand: Direct
Name: ybhG [C]
Synonym: alr1505
Alternate gene names: 17228998
Gene position: 1766957-1768471 (Clockwise)
Preceding gene: 17228994
Following gene: 17228999
Centisome position: 27.55
GC content: 46.93
Gene sequence:
>1515_bases ATGAGCATCTCCCTAATACCTAAAGAGATAAAACCTAAAGAGGTAAAACCAAAGGAACTAAAGCCGAATGGACTGAGTAA GCTAAAAGCAAATAAATGGCTACTTGGGTTACTGATATTGATACCTATGATTGGTATTAGCTATCTTGCTTATCACCAAC TGGTTGTAGTGCCTCAACAACAGGCAAAGAATAAGGTGCAAACGGCTTTAGTCAAGCGGAGCAATCTGCCAATCACGGTT TCTGCAAATGGGACGGTGCAACCCGAACGATCAGTAAATGTGAGTCCTAAAACGTCAGGGATTCTCAAGCAACTGCTGGT GAAAGAAGGTGATTCTGTGCAACAAGGGCAAATACTTGCTTACATGGATGACTCAAATCTTCAGGGGCAATTACATCAGG CTCAGGGTAATCTCGCTGCGGCTCAAGCAAATGTGCAGAAACTAGTAAATGGGAATCGTGCTGAAGATATTGCCACAGCA CAGGCACAACTGGCTGAACAAGAGGCAAATCTCCAAAAATTGCTGAATGGAAATCGACTCCAGGAAGTTGCCCAAGCCCA AGCTCAGTTGAAAGATGCTCAATATGCTCTGCGTCAAGCTGAAGATGATCTGCAAAGAAACCAAAAACTTTATAGCTCAG GTGCGATCGCCCTCCAAAGTCTAAATACCTTCGGCACTAGCCGCGATCGCGCCCAGACTCAAGTCAAGCAAGCAGAACAA GCTACTTCATTAGTGCGATCGGGGACTCGTCCAGAAGATATTACTCAAGCTAGGGCAGTGGTAAAGCAGAAACAGGAAGC TCTATCGCTCTCTCAAGCGGGGTCACGACCGGAAGATATTCAGCAAGCCCGCGCTCAAGTGGCATCGGCTCAGGGGGCAG TGCAAATTATTCAAGCAAACCTCAACGATATGGTGATCCGCGCCCCCTTTAGTGGGATTGTTGCCCGGAAATTTGCCGAT CCTGGCTCTTTCGTTACACCCACCACAGCAGGTAGTGCCGTTTCCTCTGCTTCATCTTCTTCCATCTTGGCTCTTGCATC CACGAACCAGATTGTTGCCGATGTGGCAGAAGCGAACATTGCCCAAATTCGTATGGGTATAGTTGCAACAATTCAGGCAG ATGCTTATACAGGGAAAACCTTTACCGGAGAGGTGACGCAAATTGCCACCCAGTCAAGTGTTGTGCAGAACGTGACCAGC TTTGAAGTGAAGACATCAGTGCCAGATCCCCAAGGCTTATTGCGATCAGGAATGAATGTGACTGTGGACTTTAAAGCTGG AGAGTTAAAAAATGTCATAGTAGTGCCGACTGGGGCGATCGTGCAACAAAACAATGCTCAGGGTGTGTTTGTCGCCAAGG ATCAAGGCGATTCGGTCTTTGTGCCGATTGTCGTAGGGACAACAGTAAATGACAAAACCGAGGTCAAATCTGGCTTAACT GGAAACGAAAACGTTTTACTCAGCTTTCCACCTGGAACTCGTAAGGTTTCTACAGCTAATGGCAGACCTTCATGA
Upstream 100 bases:
>100_bases CTTTAATTTTTTACTGATAATTTTCCCAAATCATAAAATTATATAGACAGTTTTATATGCTTGCCGCACTTTTGCATTTT ATAAATTAGAGGTATTACCT
Downstream 100 bases:
>100_bases AAAAACTTACTAATTTACAGACAAAAACTCGTCCGCGCCGTTCGGGAAAGCGTAAGGTATCTTTCAGTGAAGTTTTGATC ATGTCAGTCGAAACACTGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 504; Mature: 503
Protein sequence:
>504_residues MSISLIPKEIKPKEVKPKELKPNGLSKLKANKWLLGLLILIPMIGISYLAYHQLVVVPQQQAKNKVQTALVKRSNLPITV SANGTVQPERSVNVSPKTSGILKQLLVKEGDSVQQGQILAYMDDSNLQGQLHQAQGNLAAAQANVQKLVNGNRAEDIATA QAQLAEQEANLQKLLNGNRLQEVAQAQAQLKDAQYALRQAEDDLQRNQKLYSSGAIALQSLNTFGTSRDRAQTQVKQAEQ ATSLVRSGTRPEDITQARAVVKQKQEALSLSQAGSRPEDIQQARAQVASAQGAVQIIQANLNDMVIRAPFSGIVARKFAD PGSFVTPTTAGSAVSSASSSSILALASTNQIVADVAEANIAQIRMGIVATIQADAYTGKTFTGEVTQIATQSSVVQNVTS FEVKTSVPDPQGLLRSGMNVTVDFKAGELKNVIVVPTGAIVQQNNAQGVFVAKDQGDSVFVPIVVGTTVNDKTEVKSGLT GNENVLLSFPPGTRKVSTANGRPS
Sequences:
>Translated_504_residues MSISLIPKEIKPKEVKPKELKPNGLSKLKANKWLLGLLILIPMIGISYLAYHQLVVVPQQQAKNKVQTALVKRSNLPITV SANGTVQPERSVNVSPKTSGILKQLLVKEGDSVQQGQILAYMDDSNLQGQLHQAQGNLAAAQANVQKLVNGNRAEDIATA QAQLAEQEANLQKLLNGNRLQEVAQAQAQLKDAQYALRQAEDDLQRNQKLYSSGAIALQSLNTFGTSRDRAQTQVKQAEQ ATSLVRSGTRPEDITQARAVVKQKQEALSLSQAGSRPEDIQQARAQVASAQGAVQIIQANLNDMVIRAPFSGIVARKFAD PGSFVTPTTAGSAVSSASSSSILALASTNQIVADVAEANIAQIRMGIVATIQADAYTGKTFTGEVTQIATQSSVVQNVTS FEVKTSVPDPQGLLRSGMNVTVDFKAGELKNVIVVPTGAIVQQNNAQGVFVAKDQGDSVFVPIVVGTTVNDKTEVKSGLT GNENVLLSFPPGTRKVSTANGRPS >Mature_503_residues SISLIPKEIKPKEVKPKELKPNGLSKLKANKWLLGLLILIPMIGISYLAYHQLVVVPQQQAKNKVQTALVKRSNLPITVS ANGTVQPERSVNVSPKTSGILKQLLVKEGDSVQQGQILAYMDDSNLQGQLHQAQGNLAAAQANVQKLVNGNRAEDIATAQ AQLAEQEANLQKLLNGNRLQEVAQAQAQLKDAQYALRQAEDDLQRNQKLYSSGAIALQSLNTFGTSRDRAQTQVKQAEQA TSLVRSGTRPEDITQARAVVKQKQEALSLSQAGSRPEDIQQARAQVASAQGAVQIIQANLNDMVIRAPFSGIVARKFADP GSFVTPTTAGSAVSSASSSSILALASTNQIVADVAEANIAQIRMGIVATIQADAYTGKTFTGEVTQIATQSSVVQNVTSF EVKTSVPDPQGLLRSGMNVTVDFKAGELKNVIVVPTGAIVQQNNAQGVFVAKDQGDSVFVPIVVGTTVNDKTEVKSGLTG NENVLLSFPPGTRKVSTANGRPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0194 family [H]
Homologues:
Organism=Escherichia coli, GI1787013, Length=344, Percent_Identity=25, Blast_Score=73, Evalue=5e-14, Organism=Escherichia coli, GI87081796, Length=433, Percent_Identity=22.8637413394919, Blast_Score=68, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006143 - InterPro: IPR022936 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 53580; Mature: 53448
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISLIPKEIKPKEVKPKELKPNGLSKLKANKWLLGLLILIPMIGISYLAYHQLVVVPQQ CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCH QAKNKVQTALVKRSNLPITVSANGTVQPERSVNVSPKTSGILKQLLVKEGDSVQQGQILA HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE YMDDSNLQGQLHQAQGNLAAAQANVQKLVNGNRAEDIATAQAQLAEQEANLQKLLNGNRL EECCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH QEVAQAQAQLKDAQYALRQAEDDLQRNQKLYSSGAIALQSLNTFGTSRDRAQTQVKQAEQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH ATSLVRSGTRPEDITQARAVVKQKQEALSLSQAGSRPEDIQQARAQVASAQGAVQIIQAN HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEC LNDMVIRAPFSGIVARKFADPGSFVTPTTAGSAVSSASSSSILALASTNQIVADVAEANI CCCEEEECCHHHHHHHHCCCCCCEECCCCCCCHHCCCCCCCEEEEECCCHHHHHHHHHHH AQIRMGIVATIQADAYTGKTFTGEVTQIATQSSVVQNVTSFEVKTSVPDPQGLLRSGMNV HHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHCCCCE TVDFKAGELKNVIVVPTGAIVQQNNAQGVFVAKDQGDSVFVPIVVGTTVNDKTEVKSGLT EEEEECCCCCCEEEECCCCEEECCCCCEEEEEECCCCEEEEEEEEECCCCCHHHHHCCCC GNENVLLSFPPGTRKVSTANGRPS CCCCEEEECCCCCCEEECCCCCCC >Mature Secondary Structure SISLIPKEIKPKEVKPKELKPNGLSKLKANKWLLGLLILIPMIGISYLAYHQLVVVPQQ CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCH QAKNKVQTALVKRSNLPITVSANGTVQPERSVNVSPKTSGILKQLLVKEGDSVQQGQILA HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE YMDDSNLQGQLHQAQGNLAAAQANVQKLVNGNRAEDIATAQAQLAEQEANLQKLLNGNRL EECCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH QEVAQAQAQLKDAQYALRQAEDDLQRNQKLYSSGAIALQSLNTFGTSRDRAQTQVKQAEQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH ATSLVRSGTRPEDITQARAVVKQKQEALSLSQAGSRPEDIQQARAQVASAQGAVQIIQAN HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEC LNDMVIRAPFSGIVARKFADPGSFVTPTTAGSAVSSASSSSILALASTNQIVADVAEANI CCCEEEECCHHHHHHHHCCCCCCEECCCCCCCHHCCCCCCCEEEEECCCHHHHHHHHHHH AQIRMGIVATIQADAYTGKTFTGEVTQIATQSSVVQNVTSFEVKTSVPDPQGLLRSGMNV HHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHCCCCE TVDFKAGELKNVIVVPTGAIVQQNNAQGVFVAKDQGDSVFVPIVVGTTVNDKTEVKSGLT EEEEECCCCCCEEEECCCCEEECCCCCEEEEEECCCCEEEEEEEEECCCCCHHHHHCCCC GNENVLLSFPPGTRKVSTANGRPS CCCCEEEECCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA