| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
Click here to switch to the map view.
The map label for this gene is 17228938
Identifier: 17228938
GI number: 17228938
Start: 1702353
End: 1703375
Strand: Direct
Name: 17228938
Synonym: alr1443
Alternate gene names: NA
Gene position: 1702353-1703375 (Clockwise)
Preceding gene: 17228937
Following gene: 17228939
Centisome position: 26.54
GC content: 38.22
Gene sequence:
>1023_bases ATGAGTACTGTTGGAATTTTTGGGGGAAGAGGTACTTCAGAAGAAAGCCATCTTCAGAATGCTAGATGCCAATATATGGT TCTTGATGAGGTAGATGTTGCAATAACGAATGAATACCGTCGCTTTAAATTTCTCATTTTTCCATCACGATTATTTACAT TTGCTAGGATATGTGCTAATGCAATTAATAATAATATAGCTTTTCCAACTTGCATGGAGCGATTTTTGGAACGTGGAGGA CGCATCCTTTTTTGTCCTCCATCTCAACTACCAACTGACTATTGGTACCATGAAGAACGTACTTGCTTACTAATAAACTG GTTACCAGTTGGAACTTTAAAGTTACATCAAGGCTCTAGACGTAAACAAACAGTCTCTATTCAAGTACAACAGCCCGATC ACCCTATTTGTAACGACCTTACGGGCAAAGAGAAAGTTGATCTGTATAGTTACTTTTCATTTGAGGGAATATTGAACGCT GAGGTGCTTATTTCGAGCAGAAGAGGTACACCTTTAATCACCACAATACCATTTGGTGCAGGATTTGTTCTTGTTAGTGC TATAGACTTGCCCTTTCTCCACCCAGATTTTCCTAGTAGTGATGCTACAAGCCTATTTCATAACATTCTTCATTGGGGTC AAGAAGTTCCTAGTATAGCCGTCACTTTTAATTCATTAGTAACGCGTGTCTTAACTCATGTAGGGAGTCATGAAGCTCAC CTTATGGAAAGGGCGGATCAAGCAATATTAGCATGTCGGTATAGCGAAGCTTGCGACTACGCATTCAGAGCATTCGAGAG AATTTTACGTTTTAAGGCTGGAAGTACAAAAACATTAAATGACGCTATTGATCAACTTTTTCCAAAAACAAGTTCACAAA ATAGTTTTTGTCATGGAGTAAGAATTACACGTAATGCATCCGCTCATGGTACTCGTTTACCAGAGGAAGTTACTATTGAG GAAACTGAATGTTTATTCAGTTCAATAAAATTTATTCTTTCTGGATTGTTAGCAGATCCGTAG
Upstream 100 bases:
>100_bases TCTTAAAAGTATTTTATATTGAGCAAGGTAAGTATAATGAATAAAAGAGATTCTTATATTTTAGTATTAATCTTTGTTTA AAGAGATAAATAAAGAATTT
Downstream 100 bases:
>100_bases TTATGTTTGTATCTCTAATGATGTGAGCATACTGATTTAGTAGCAAGTAGCAATTAGGGTGCGTCAGCTTGGATATACAT TTCATCATGAATATTAATTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 340; Mature: 339
Protein sequence:
>340_residues MSTVGIFGGRGTSEESHLQNARCQYMVLDEVDVAITNEYRRFKFLIFPSRLFTFARICANAINNNIAFPTCMERFLERGG RILFCPPSQLPTDYWYHEERTCLLINWLPVGTLKLHQGSRRKQTVSIQVQQPDHPICNDLTGKEKVDLYSYFSFEGILNA EVLISSRRGTPLITTIPFGAGFVLVSAIDLPFLHPDFPSSDATSLFHNILHWGQEVPSIAVTFNSLVTRVLTHVGSHEAH LMERADQAILACRYSEACDYAFRAFERILRFKAGSTKTLNDAIDQLFPKTSSQNSFCHGVRITRNASAHGTRLPEEVTIE ETECLFSSIKFILSGLLADP
Sequences:
>Translated_340_residues MSTVGIFGGRGTSEESHLQNARCQYMVLDEVDVAITNEYRRFKFLIFPSRLFTFARICANAINNNIAFPTCMERFLERGG RILFCPPSQLPTDYWYHEERTCLLINWLPVGTLKLHQGSRRKQTVSIQVQQPDHPICNDLTGKEKVDLYSYFSFEGILNA EVLISSRRGTPLITTIPFGAGFVLVSAIDLPFLHPDFPSSDATSLFHNILHWGQEVPSIAVTFNSLVTRVLTHVGSHEAH LMERADQAILACRYSEACDYAFRAFERILRFKAGSTKTLNDAIDQLFPKTSSQNSFCHGVRITRNASAHGTRLPEEVTIE ETECLFSSIKFILSGLLADP >Mature_339_residues STVGIFGGRGTSEESHLQNARCQYMVLDEVDVAITNEYRRFKFLIFPSRLFTFARICANAINNNIAFPTCMERFLERGGR ILFCPPSQLPTDYWYHEERTCLLINWLPVGTLKLHQGSRRKQTVSIQVQQPDHPICNDLTGKEKVDLYSYFSFEGILNAE VLISSRRGTPLITTIPFGAGFVLVSAIDLPFLHPDFPSSDATSLFHNILHWGQEVPSIAVTFNSLVTRVLTHVGSHEAHL MERADQAILACRYSEACDYAFRAFERILRFKAGSTKTLNDAIDQLFPKTSSQNSFCHGVRITRNASAHGTRLPEEVTIEE TECLFSSIKFILSGLLADP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38315; Mature: 38184
Theoretical pI: Translated: 6.93; Mature: 6.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTVGIFGGRGTSEESHLQNARCQYMVLDEVDVAITNEYRRFKFLIFPSRLFTFARICAN CCCEEECCCCCCCHHHHHHCCCEEEEEEECCCEEEECCCEEEEEEEEHHHHHHHHHHHHH AINNNIAFPTCMERFLERGGRILFCPPSQLPTDYWYHEERTCLLINWLPVGTLKLHQGSR HHCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCEECCCCEEEEEEEECCCEEEECCCCC RKQTVSIQVQQPDHPICNDLTGKEKVDLYSYFSFEGILNAEVLISSRRGTPLITTIPFGA CCEEEEEEEECCCCCCCCCCCCCCCCHHHHEEECCCCCCEEEEEECCCCCEEEEEECCCC GFVLVSAIDLPFLHPDFPSSDATSLFHNILHWGQEVPSIAVTFNSLVTRVLTHVGSHEAH HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCHHHH LMERADQAILACRYSEACDYAFRAFERILRFKAGSTKTLNDAIDQLFPKTSSQNSFCHGV HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEECCE RITRNASAHGTRLPEEVTIEETECLFSSIKFILSGLLADP EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure STVGIFGGRGTSEESHLQNARCQYMVLDEVDVAITNEYRRFKFLIFPSRLFTFARICAN CCEEECCCCCCCHHHHHHCCCEEEEEEECCCEEEECCCEEEEEEEEHHHHHHHHHHHHH AINNNIAFPTCMERFLERGGRILFCPPSQLPTDYWYHEERTCLLINWLPVGTLKLHQGSR HHCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCEECCCCEEEEEEEECCCEEEECCCCC RKQTVSIQVQQPDHPICNDLTGKEKVDLYSYFSFEGILNAEVLISSRRGTPLITTIPFGA CCEEEEEEEECCCCCCCCCCCCCCCCHHHHEEECCCCCCEEEEEECCCCCEEEEEECCCC GFVLVSAIDLPFLHPDFPSSDATSLFHNILHWGQEVPSIAVTFNSLVTRVLTHVGSHEAH HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCHHHH LMERADQAILACRYSEACDYAFRAFERILRFKAGSTKTLNDAIDQLFPKTSSQNSFCHGV HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEECCE RITRNASAHGTRLPEEVTIEETECLFSSIKFILSGLLADP EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA