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The map label for this gene is rbpA1

Identifier: 17228236

GI number: 17228236

Start: 863575

End: 863883

Strand: Direct

Name: rbpA1

Synonym: alr0741

Alternate gene names: 17228236

Gene position: 863575-863883 (Clockwise)

Preceding gene: 17228235

Following gene: 17228237

Centisome position: 13.46

GC content: 49.84

Gene sequence:

>309_bases
ATGTCAATTTACGTAGGCAACCTCTCGTACGAAGTTACTCAAGACACCTTGAGCGCTGTTTTTGCAGAATACGGTACTGT
AAAACGTGTTCAACTACCTACTGACCGCGAAACAGGACAACCACGGGGCTTTGGTTTTGTGGAAATGGGCAGTGAAGCTG
AAGAAGCAGCCGCTATCGAAGCTCTTGATGGTGCTGAATGGATGGGACGTGACCTAAAAGTTAACAAAGCCAAGCCCAGA
GAAGACCGAGGTCCTTCTGGTGGTAATCGGGGAGGATATGGTGGAGGCGGTGGACGCAACCGCTACTAA

Upstream 100 bases:

>100_bases
TATCTTTGTTTTTAGTATTGACGGGCTTTTCCCTTTTAGTATTTACAGGCTTTTCTCCGAAATTTACATCTCTAGACAGT
AACAATTTTGGAGACCATCA

Downstream 100 bases:

>100_bases
GCTTTTAAAGCTGAAATTTTTGTGGCCGATTTTCAGATTAGACAAAGAGTACGCCTTTTTTTTAAACTTGAGTCAACTGG
ACGGCTTACCATTATGAGCC

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 101

Protein sequence:

>102_residues
MSIYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDRETGQPRGFGFVEMGSEAEEAAAIEALDGAEWMGRDLKVNKAKPR
EDRGPSGGNRGGYGGGGGRNRY

Sequences:

>Translated_102_residues
MSIYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDRETGQPRGFGFVEMGSEAEEAAAIEALDGAEWMGRDLKVNKAKPR
EDRGPSGGNRGGYGGGGGRNRY
>Mature_101_residues
SIYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDRETGQPRGFGFVEMGSEAEEAAAIEALDGAEWMGRDLKVNKAKPRE
DRGPSGGNRGGYGGGGGRNRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain

Homologues:

Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=42.1052631578947, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=42.1052631578947, Blast_Score=70, Evalue=5e-13,
Organism=Homo sapiens, GI5174637, Length=77, Percent_Identity=42.8571428571429, Blast_Score=69, Evalue=7e-13,
Organism=Homo sapiens, GI45439316, Length=77, Percent_Identity=42.8571428571429, Blast_Score=69, Evalue=8e-13,
Organism=Homo sapiens, GI4757926, Length=82, Percent_Identity=36.5853658536585, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI35493811, Length=82, Percent_Identity=36.5853658536585, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI47271443, Length=77, Percent_Identity=42.8571428571429, Blast_Score=66, Evalue=5e-12,
Organism=Homo sapiens, GI303305009, Length=77, Percent_Identity=42.8571428571429, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI116734698, Length=104, Percent_Identity=32.6923076923077, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI116734694, Length=104, Percent_Identity=32.6923076923077, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI116734696, Length=104, Percent_Identity=32.6923076923077, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI15055543, Length=78, Percent_Identity=39.7435897435897, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI310118284, Length=112, Percent_Identity=36.6071428571429, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=42.6829268292683, Blast_Score=78, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17508585, Length=78, Percent_Identity=42.3076923076923, Blast_Score=75, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=46.1538461538462, Blast_Score=75, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=42.1052631578947, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17539498, Length=78, Percent_Identity=38.4615384615385, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321599, Length=79, Percent_Identity=34.1772151898734, Blast_Score=63, Evalue=9e-12,
Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=41.025641025641, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17137710, Length=82, Percent_Identity=40.2439024390244, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI19920866, Length=82, Percent_Identity=36.5853658536585, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24582412, Length=82, Percent_Identity=36.5853658536585, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24582417, Length=82, Percent_Identity=36.5853658536585, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45550943, Length=82, Percent_Identity=36.5853658536585, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582419, Length=82, Percent_Identity=36.5853658536585, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582423, Length=82, Percent_Identity=36.5853658536585, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582421, Length=82, Percent_Identity=36.5853658536585, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBPA_NOSS1 (Q44560)

Other databases:

- EMBL:   BA000019
- PIR:   AC1899
- PIR:   I39621
- RefSeq:   NP_484784.1
- HSSP:   Q9UNP9
- ProteinModelPortal:   Q44560
- SMR:   Q44560
- STRING:   Q44560
- GeneID:   1104336
- GenomeReviews:   BA000019_GR
- KEGG:   ana:alr0741
- eggNOG:   COG0724
- HOGENOM:   HBG756718
- OMA:   SALEMNG
- PhylomeDB:   Q44560
- ProtClustDB:   CLSK2302116
- BioCyc:   NSP103690:ALR0741-MONOMER
- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465
- Gene3D:   G3DSA:3.30.70.330
- PANTHER:   PTHR10432:SF31
- SMART:   SM00360

Pfam domain/function: PF00076 RRM_1

EC number: NA

Molecular weight: Translated: 10963; Mature: 10832

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDRETGQPRGFGFVEMGSEAEEAAAIE
CEEEECCCEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHH
ALDGAEWMGRDLKVNKAKPREDRGPSGGNRGGYGGGGGRNRY
HCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDRETGQPRGFGFVEMGSEAEEAAAIE
EEEECCCEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHH
ALDGAEWMGRDLKVNKAKPREDRGPSGGNRGGYGGGGGRNRY
HCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840