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The map label for this gene is cpcC

Identifier: 17228026

GI number: 17228026

Start: 622058

End: 622918

Strand: Direct

Name: cpcC

Synonym: alr0530

Alternate gene names: 17228026

Gene position: 622058-622918 (Clockwise)

Preceding gene: 17228025

Following gene: 17228027

Centisome position: 9.7

GC content: 46.11

Gene sequence:

>861_bases
ATGGCAATTACAACAGCAGCATCTAGGCTGGGGACAGAGCCTTTTAGCGACGCACCTAAAGTAGAATTACGCCCCAAAGC
TAGCAGAGAAGAAGTAGAATCAGTGATTCGCGCCGTTTATCGGCACGTTTTGGGCAATGATTACATACTGGCATCAGAAC
GCCTTGTAAGTGCAGAGTCTCTATTGAGAGATGGCAATCTGACAGTGCGTGAATTTGTGCGTAGCGTTGCTAAATCAGAA
CTCTACAAAAAGAAATTTTTCTACAACAGCTTCCAAACTCGGCTAATCGAACTTAACTATAAACACCTGTTAGGTCGCGC
GCCTTACGATGAGTCAGAAGTTGTTTACCACTTGGACTTGTACCAAAACAAAGGTTACGATGCCGAAATAGACTCCTATA
TAGATTCATGGGAGTATCAAAGCAATTTCGGTGATAACGTCGTTCCTTACTACCGTGGTTTTGAGACTCAAGTAGGACAA
AAAACCGCAGGTTTCAACCGGATATTCCGTTTATACCGTGGTTATGCTAACAGCGATCGCGCTCAAGTAGAAGGTACAAA
ATCTCGATTGGCGCGGGAATTAGCTAGCAATAAAGCTTCTACAATTGTTGGGCCATCTGGAACTAATGATAGTTGGGGTT
TCCGGGCTTCAGCAGATGTCGCTCCCAAGAAAAACTTGGGTAATGCCGTTGGTGAAGGCGATCGCGTCTATCGACTAGAA
GTTACCGGAATCCGTAGCCCTGGCTACCCCAGTGTACGGCGGAGCAGCACGGTATTTATAGTACCTTACGAGCGGCTCTC
TGACAAGATCCAGCAAGTTCACAAGCAAGGTGGCAAAATCGTTAGCGTCACCTCTGCGTAA

Upstream 100 bases:

>100_bases
GTAGTCATCATCTAGCAGTTGAATCTCGTTCCGGGCATAGTTTTATCTAGGAATAGCTGTCGGTAGTTATAATCGGCAAA
AAAAATAGGGGAAACTTAAA

Downstream 100 bases:

>100_bases
GATAAGCGGATTTTGTCAGTGGTCAGTGGGTCATTAGTTAGTAGTCAGGATTCAAACAACTGACAACTAGCAACTGACAA
CTAACACGCGACAGCGCTAT

Product: phycocyanin-associated rod linker protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MAITTAASRLGTEPFSDAPKVELRPKASREEVESVIRAVYRHVLGNDYILASERLVSAESLLRDGNLTVREFVRSVAKSE
LYKKKFFYNSFQTRLIELNYKHLLGRAPYDESEVVYHLDLYQNKGYDAEIDSYIDSWEYQSNFGDNVVPYYRGFETQVGQ
KTAGFNRIFRLYRGYANSDRAQVEGTKSRLARELASNKASTIVGPSGTNDSWGFRASADVAPKKNLGNAVGEGDRVYRLE
VTGIRSPGYPSVRRSSTVFIVPYERLSDKIQQVHKQGGKIVSVTSA

Sequences:

>Translated_286_residues
MAITTAASRLGTEPFSDAPKVELRPKASREEVESVIRAVYRHVLGNDYILASERLVSAESLLRDGNLTVREFVRSVAKSE
LYKKKFFYNSFQTRLIELNYKHLLGRAPYDESEVVYHLDLYQNKGYDAEIDSYIDSWEYQSNFGDNVVPYYRGFETQVGQ
KTAGFNRIFRLYRGYANSDRAQVEGTKSRLARELASNKASTIVGPSGTNDSWGFRASADVAPKKNLGNAVGEGDRVYRLE
VTGIRSPGYPSVRRSSTVFIVPYERLSDKIQQVHKQGGKIVSVTSA
>Mature_285_residues
AITTAASRLGTEPFSDAPKVELRPKASREEVESVIRAVYRHVLGNDYILASERLVSAESLLRDGNLTVREFVRSVAKSEL
YKKKFFYNSFQTRLIELNYKHLLGRAPYDESEVVYHLDLYQNKGYDAEIDSYIDSWEYQSNFGDNVVPYYRGFETQVGQK
TAGFNRIFRLYRGYANSDRAQVEGTKSRLARELASNKASTIVGPSGTNDSWGFRASADVAPKKNLGNAVGEGDRVYRLEV
TGIRSPGYPSVRRSSTVFIVPYERLSDKIQQVHKQGGKIVSVTSA

Specific function: Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a d

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycocyanin

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PYR1_NOSS1 (P07123)

Other databases:

- EMBL:   X05239
- EMBL:   AF178757
- EMBL:   BA000019
- PIR:   AI1872
- PIR:   C29674
- RefSeq:   NP_484574.1
- STRING:   P07123
- GeneID:   1104126
- GenomeReviews:   BA000019_GR
- KEGG:   ana:alr0530
- NMPDR:   fig|103690.1.peg.841
- eggNOG:   NOG11002
- HOGENOM:   HBG287806
- OMA:   NFQTRVI
- ProtClustDB:   CLSK892735
- BioCyc:   NSP103690:ALR0530-MONOMER
- GO:   GO:0030089
- GO:   GO:0015979
- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- PIRSF:   PIRSF005898
- ProDom:   PD000852

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly

EC number: NA

Molecular weight: Translated: 32209; Mature: 32078

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS51441 CPCD_LIKE; PS51445 PBS_LINKER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITTAASRLGTEPFSDAPKVELRPKASREEVESVIRAVYRHVLGNDYILASERLVSAES
CCCCCCHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHH
LLRDGNLTVREFVRSVAKSELYKKKFFYNSFQTRLIELNYKHLLGRAPYDESEVVYHLDL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHCCCCCCCCCEEEEEEE
YQNKGYDAEIDSYIDSWEYQSNFGDNVVPYYRGFETQVGQKTAGFNRIFRLYRGYANSDR
ECCCCCCCHHHHHHHCCHHHCCCCCCCCHHHCCCHHHCCCHHHHHHHHHHHHHCCCCCCH
AQVEGTKSRLARELASNKASTIVGPSGTNDSWGFRASADVAPKKNLGNAVGEGDRVYRLE
HHCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHCCHHCCCCCEEEEEE
VTGIRSPGYPSVRRSSTVFIVPYERLSDKIQQVHKQGGKIVSVTSA
EEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCEEEEECC
>Mature Secondary Structure 
AITTAASRLGTEPFSDAPKVELRPKASREEVESVIRAVYRHVLGNDYILASERLVSAES
CCCCCHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHH
LLRDGNLTVREFVRSVAKSELYKKKFFYNSFQTRLIELNYKHLLGRAPYDESEVVYHLDL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHCCCCCCCCCEEEEEEE
YQNKGYDAEIDSYIDSWEYQSNFGDNVVPYYRGFETQVGQKTAGFNRIFRLYRGYANSDR
ECCCCCCCHHHHHHHCCHHHCCCCCCCCHHHCCCHHHCCCHHHHHHHHHHHHHCCCCCCH
AQVEGTKSRLARELASNKASTIVGPSGTNDSWGFRASADVAPKKNLGNAVGEGDRVYRLE
HHCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHCCHHCCCCCEEEEEE
VTGIRSPGYPSVRRSSTVFIVPYERLSDKIQQVHKQGGKIVSVTSA
EEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3109890; 11237320; 11759840; 1743523