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The map label for this gene is cpcD

Identifier: 17228027

GI number: 17228027

Start: 623050

End: 623292

Strand: Direct

Name: cpcD

Synonym: asr0531

Alternate gene names: 17228027

Gene position: 623050-623292 (Clockwise)

Preceding gene: 17228026

Following gene: 17228028

Centisome position: 9.71

GC content: 46.09

Gene sequence:

>243_bases
ATGTTCGGTCAAACCACACTTGGGGCTGGTAGCGTTTCTTCTTCTGCTAGTCGAGTATTTCGCTACGAAGTCGTAGGCTT
GCGGCAAAGCTCAGAAACAGACAAAAACAAATACAACATCCGGAATAGCGGTAGTGTGTTTATCACAGTACCATACAGCC
GGATGAACGAAGAATACCAACGGATTACCCGCTTGGGTGGCAAAATCGTCAAGATTGAGCAATTAGTTTCCGCAGAGGCA
TAA

Upstream 100 bases:

>100_bases
CATTAGTTAGTAGTCAGGATTCAAACAACTGACAACTAGCAACTGACAACTAACACGCGACAGCGCTATAAAACTTACAA
CAATAGGAGATAGAGAAGTA

Downstream 100 bases:

>100_bases
TAGCGCCCTGGTAATGATAGAACCCAGTGTGGAAGAATTTCCCGCAGAGAACGGGCCACAGCTAACACCAGAACTAGCCA
TAGCTAATCTGCAATCATCA

Product: rod-capping linker polypeptide

Products: NA

Alternate protein names: L-8.9/R; Rod-capping linker protein

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MFGQTTLGAGSVSSSASRVFRYEVVGLRQSSETDKNKYNIRNSGSVFITVPYSRMNEEYQRITRLGGKIVKIEQLVSAEA

Sequences:

>Translated_80_residues
MFGQTTLGAGSVSSSASRVFRYEVVGLRQSSETDKNKYNIRNSGSVFITVPYSRMNEEYQRITRLGGKIVKIEQLVSAEA
>Mature_80_residues
MFGQTTLGAGSVSSSASRVFRYEVVGLRQSSETDKNKYNIRNSGSVFITVPYSRMNEEYQRITRLGGKIVKIEQLVSAEA

Specific function: Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a d

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycocyanin (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cpcD-like domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PYS1_NOSS1 (P07124)

Other databases:

- EMBL:   X05239
- EMBL:   AF178757
- EMBL:   BA000019
- PIR:   AB1873
- RefSeq:   NP_484575.1
- STRING:   P07124
- GeneID:   1104127
- GenomeReviews:   BA000019_GR
- KEGG:   ana:asr0531
- NMPDR:   fig|103690.1.peg.842
- eggNOG:   NOG150952
- HOGENOM:   HBG438425
- OMA:   MNEEMQR
- ProtClustDB:   CLSK892734
- BioCyc:   NSP103690:ASR0531-MONOMER
- GO:   GO:0030089
- GO:   GO:0015979
- InterPro:   IPR008213

Pfam domain/function: PF01383 CpcD

EC number: NA

Molecular weight: Translated: 8895; Mature: 8895

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS51441 CPCD_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGQTTLGAGSVSSSASRVFRYEVVGLRQSSETDKNKYNIRNSGSVFITVPYSRMNEEYQ
CCCCCCCCCCCCCCCHHHEEHEEEEECCCCCCCCCCCEEECCCCCEEEEECHHHCCHHHH
RITRLGGKIVKIEQLVSAEA
HHHHHCCCEEEHHHHHCCCC
>Mature Secondary Structure
MFGQTTLGAGSVSSSASRVFRYEVVGLRQSSETDKNKYNIRNSGSVFITVPYSRMNEEYQ
CCCCCCCCCCCCCCCHHHEEHEEEEECCCCCCCCCCCEEECCCCCEEEEECHHHCCHHHH
RITRLGGKIVKIEQLVSAEA
HHHHHCCCEEEHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3109890; 11237320; 11759840