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The map label for this gene is pecB

Identifier: 17228019

GI number: 17228019

Start: 616378

End: 616896

Strand: Direct

Name: pecB

Synonym: alr0523

Alternate gene names: 17228019

Gene position: 616378-616896 (Clockwise)

Preceding gene: 17228018

Following gene: 17228020

Centisome position: 9.61

GC content: 39.69

Gene sequence:

>519_bases
ATGCTCGATGCTTTTTCCAAAGTAGTTGAACAGGCAGATAGAAAAGGTAATTATCTTAGTGGAGATGAAATCAATGCGTT
ATCGGCATTAGTTGCTGATAGTAATAAGCGGTTAGATATAGTTAACAGACTAACAAGTAATGCTTCCTCCATTGTGGCTA
ATGCTTATCGTGCTTTAGTTGCTGAACGTCCACAAATATTTAATGCTGGTGGTGCTTGTTTCCACAATCGTAACCAAGCT
GCTTGTATCCGTGATTTAGGATTTATTCTGCGTTATGTCACCTATTCTGTATTAGCAGGTGATGGTAGTGTCATGGACGA
TCGCTGCTTAAATGGTCTGAGGGAAACATATCAAGCTTTAGGTACTCCTGGCGATGCAGTAGCATCTGGAATCCAAAAAA
TGAAAGATGCAGCAATTGCAATTGCTAATGACTCCAAAGGCATTACTAAAGGTGATTGTAGTCAGTTAATTGCTGAATTA
GCTAGCTATTTTGATCGCGCTGCTTCTGCGGTTGTTTAA

Upstream 100 bases:

>100_bases
TATGGGAGTTAATTCTGCTTGAATATTTGTTTTCTAAATAGTAAGAATAATTGCAATCGACCTTATAAAAAGCTGCAATG
ACCTTTAGGAGGAAAGAAAG

Downstream 100 bases:

>100_bases
ATAGATGTTTTTTCCAAAACTTTTTTCAAACTGACTGTTAGTAATTAATCGCAAATCAAGGAGATTAGGAGAAGTATGAA
AACACCTTTGACCGAAGCGA

Product: phycoerythrocyanin beta chain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MLDAFSKVVEQADRKGNYLSGDEINALSALVADSNKRLDIVNRLTSNASSIVANAYRALVAERPQIFNAGGACFHNRNQA
ACIRDLGFILRYVTYSVLAGDGSVMDDRCLNGLRETYQALGTPGDAVASGIQKMKDAAIAIANDSKGITKGDCSQLIAEL
ASYFDRAASAVV

Sequences:

>Translated_172_residues
MLDAFSKVVEQADRKGNYLSGDEINALSALVADSNKRLDIVNRLTSNASSIVANAYRALVAERPQIFNAGGACFHNRNQA
ACIRDLGFILRYVTYSVLAGDGSVMDDRCLNGLRETYQALGTPGDAVASGIQKMKDAAIAIANDSKGITKGDCSQLIAEL
ASYFDRAASAVV
>Mature_172_residues
MLDAFSKVVEQADRKGNYLSGDEINALSALVADSNKRLDIVNRLTSNASSIVANAYRALVAERPQIFNAGGACFHNRNQA
ACIRDLGFILRYVTYSVLAGDGSVMDDRCLNGLRETYQALGTPGDAVASGIQKMKDAAIAIANDSKGITKGDCSQLIAEL
ASYFDRAASAVV

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Forms the periphery of the phycobilisome rod (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PHEB_NOSS1 (P35797)

Other databases:

- EMBL:   AF178757
- EMBL:   BA000019
- PIR:   A41841
- PIR:   AB1872
- RefSeq:   NP_484567.1
- ProteinModelPortal:   P35797
- SMR:   P35797
- STRING:   P35797
- GeneID:   1104119
- GenomeReviews:   BA000019_GR
- KEGG:   ana:alr0523
- NMPDR:   fig|103690.1.peg.834
- eggNOG:   NOG75191
- HOGENOM:   HBG635139
- OMA:   SIVANAY
- ProtClustDB:   CLSK892737
- BioCyc:   NSP103690:ALR0523-MONOMER
- GO:   GO:0030089
- GO:   GO:0015979
- GO:   GO:0006810
- InterPro:   IPR009050
- InterPro:   IPR012128
- Gene3D:   G3DSA:1.10.490.20
- PIRSF:   PIRSF000081

Pfam domain/function: PF00502 Phycobilisome; SSF46458 Globin_like

EC number: NA

Molecular weight: Translated: 18284; Mature: 18284

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: BINDING 82-82 BINDING 153-153

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDAFSKVVEQADRKGNYLSGDEINALSALVADSNKRLDIVNRLTSNASSIVANAYRALV
CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHH
AERPQIFNAGGACFHNRNQAACIRDLGFILRYVTYSVLAGDGSVMDDRCLNGLRETYQAL
HCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
GTPGDAVASGIQKMKDAAIAIANDSKGITKGDCSQLIAELASYFDRAASAVV
CCCHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDAFSKVVEQADRKGNYLSGDEINALSALVADSNKRLDIVNRLTSNASSIVANAYRALV
CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHH
AERPQIFNAGGACFHNRNQAACIRDLGFILRYVTYSVLAGDGSVMDDRCLNGLRETYQAL
HCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
GTPGDAVASGIQKMKDAAIAIANDSKGITKGDCSQLIAELASYFDRAASAVV
CCCHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1556083; 11759840