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The map label for this gene is 39546388

Identifier: 39546388

GI number: 39546388

Start: 4241948

End: 4242238

Strand: Direct

Name: 39546388

Synonym: STM4033

Alternate gene names: NA

Gene position: 4241948-4242238 (Clockwise)

Preceding gene: 39546387

Following gene: 16767303

Centisome position: 87.33

GC content: 45.02

Gene sequence:

>291_bases
ATGGATAAAGTGTTATTTGAGCGATTAACTCAAAGTATGTCTCAAATGAATGAAATCATTGAAGGGACCCGTGAACCTTC
TCGTACCTTTCATATTGATGCAATGAAGATTAAAGAAATACGGCAGGCATCTGGGTTGTCGCAATCTAAGTTTGCAGAGC
TGATTTCGGTCAACGTGGATACGCTGCGCAACTGGGAGCAAGGAAGACGTTCACCGACAGGGCCAGCCAAAGCGTTACTT
CGCGCCATTGCCAACGACCCGAGAAACGTTATACAAGCATTGCGTTATTGA

Upstream 100 bases:

>100_bases
GTATGAGATTCGCTTGCTTCTGATTTATCAAAAAGGCATTAAAGATGATCTCACGCCGCAGGAAAAAGCGGTGCTTCGTA
TGCTGAATGAGAGGTGGTAG

Downstream 100 bases:

>100_bases
GCAATGATCCGGCTAACGTAGATTGCTAGCCGGTATACCAGAGAACTTATTCCCCTTCCCCCGGGAACAGGAACGGGTTG
ATGGAACTGCGGGCGAAGCC

Product: regulatory protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Helix-Turn-Helix XRE Family Protein; MerR Family Regulatory Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Protein; Helix-Turn-Helix Domain-Containing Protein; Cro/CI Family Phage Transcriptional Regulator; Transcriptional Repressor; Helix-Turn-Helix Family Protein

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MDKVLFERLTQSMSQMNEIIEGTREPSRTFHIDAMKIKEIRQASGLSQSKFAELISVNVDTLRNWEQGRRSPTGPAKALL
RAIANDPRNVIQALRY

Sequences:

>Translated_96_residues
MDKVLFERLTQSMSQMNEIIEGTREPSRTFHIDAMKIKEIRQASGLSQSKFAELISVNVDTLRNWEQGRRSPTGPAKALL
RAIANDPRNVIQALRY
>Mature_96_residues
MDKVLFERLTQSMSQMNEIIEGTREPSRTFHIDAMKIKEIRQASGLSQSKFAELISVNVDTLRNWEQGRRSPTGPAKALL
RAIANDPRNVIQALRY

Specific function: Unknown

COG id: COG2944

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10972; Mature: 10972

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKVLFERLTQSMSQMNEIIEGTREPSRTFHIDAMKIKEIRQASGLSQSKFAELISVNVD
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
TLRNWEQGRRSPTGPAKALLRAIANDPRNVIQALRY
HHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MDKVLFERLTQSMSQMNEIIEGTREPSRTFHIDAMKIKEIRQASGLSQSKFAELISVNVD
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
TLRNWEQGRRSPTGPAKALLRAIANDPRNVIQALRY
HHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA