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The map label for this gene is fdhD [H]

Identifier: 16767303

GI number: 16767303

Start: 4248003

End: 4248839

Strand: Direct

Name: fdhD [H]

Synonym: STM4038

Alternate gene names: 16767303

Gene position: 4248003-4248839 (Clockwise)

Preceding gene: 39546388

Following gene: 16767305

Centisome position: 87.45

GC content: 55.56

Gene sequence:

>837_bases
GTGAACAATATACTGTCTGAAGAAGTCCTAAATGTGACTGATTTCACAACCTCACGCCAGTTGACTCTCTGGAAACGCGA
GGATTTGCAGTCCCCCCAACTTGATGATGTTGCCGAGGAAGTGCCAGTGGCACTGGTGTATAACGGCATTTCGCATGTCG
TTATGATGGCCTCTCCGAAAGATCTGACGCATTTTGCAATGGGGTTTTCTCTGTCGGAAGGGATCATTGACAGCCCGCGT
GAAATCTATGGCATGGACGTTGTACCGTCCTGTAACGGACTTGAAGTGCAGATTGATCTTTCCAGCCGTCGATTTATGGG
GCTGAAAGCGCGTCGTCGCGCGCTGGCCGGACGTACCGGTTGCGGCGTATGTGGCGTGGAACAGCTCAATGACATCGGTA
AGCCGGTGCAACCGCTGCCGTTTAGCCAAACGTTTAATCTCGGTAACCTTGATCGCGCGTTAAAACATCTGAATGATTTT
CAACCGACGGGTAAGCTGACGGGTTGTACGCACGCTGCGGCATGGGTCATGCCGTCGGGTGAACTGGCGGGGGGCCATGA
AGATGTCGGACGCCACGTTGCGCTGGATAAACTGCTCGGCCGCCGCGCTACGGAAGGTGAGGAATGGCGGCAAGGCGCGG
CGCTGGTTTCCAGTCGCGCGAGTTACGAAATGGTGCAGAAGTCCGCGATGTGCGGCGTTGAAATTCTGTTTGCCGTCTCT
GCCGCAACGACGCTGGCGGTCGAGGTGGCTGAACGCTGCAATCTGACGCTGGTGGGGTTCTGTAAGCCGGGTCGGGCGAC
GATTTATACCCATCCGCAGCGGTTAATCGCAGACTAA

Upstream 100 bases:

>100_bases
CCGCAAAGGTTCAGAATTGGATAAATTTTCCTCCATCCGGGAGGAGTTGTAACAGAATACCATAATGTTGGTGTGTGTGT
TCTTATATGGTTAAAAGAAA

Downstream 100 bases:

>100_bases
AATAGTACCCTCTACATTTGCGTAAAATATATATTTTCTCAATTTTACAGCCTCTCTTGATAACGGAATCACGTATAGTG
GCGAGGCCATACAGGTTTTA

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MNNILSEEVLNVTDFTTSRQLTLWKREDLQSPQLDDVAEEVPVALVYNGISHVVMMASPKDLTHFAMGFSLSEGIIDSPR
EIYGMDVVPSCNGLEVQIDLSSRRFMGLKARRRALAGRTGCGVCGVEQLNDIGKPVQPLPFSQTFNLGNLDRALKHLNDF
QPTGKLTGCTHAAAWVMPSGELAGGHEDVGRHVALDKLLGRRATEGEEWRQGAALVSSRASYEMVQKSAMCGVEILFAVS
AATTLAVEVAERCNLTLVGFCKPGRATIYTHPQRLIAD

Sequences:

>Translated_278_residues
MNNILSEEVLNVTDFTTSRQLTLWKREDLQSPQLDDVAEEVPVALVYNGISHVVMMASPKDLTHFAMGFSLSEGIIDSPR
EIYGMDVVPSCNGLEVQIDLSSRRFMGLKARRRALAGRTGCGVCGVEQLNDIGKPVQPLPFSQTFNLGNLDRALKHLNDF
QPTGKLTGCTHAAAWVMPSGELAGGHEDVGRHVALDKLLGRRATEGEEWRQGAALVSSRASYEMVQKSAMCGVEILFAVS
AATTLAVEVAERCNLTLVGFCKPGRATIYTHPQRLIAD
>Mature_278_residues
MNNILSEEVLNVTDFTTSRQLTLWKREDLQSPQLDDVAEEVPVALVYNGISHVVMMASPKDLTHFAMGFSLSEGIIDSPR
EIYGMDVVPSCNGLEVQIDLSSRRFMGLKARRRALAGRTGCGVCGVEQLNDIGKPVQPLPFSQTFNLGNLDRALKHLNDF
QPTGKLTGCTHAAAWVMPSGELAGGHEDVGRHVALDKLLGRRATEGEEWRQGAALVSSRASYEMVQKSAMCGVEILFAVS
AATTLAVEVAERCNLTLVGFCKPGRATIYTHPQRLIAD

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=275, Percent_Identity=84, Blast_Score=493, Evalue=1e-141,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 30270; Mature: 30270

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNILSEEVLNVTDFTTSRQLTLWKREDLQSPQLDDVAEEVPVALVYNGISHVVMMASPK
CCCHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCHHHHHHHCCCCEEECCHHHEEEEECCC
DLTHFAMGFSLSEGIIDSPREIYGMDVVPSCNGLEVQIDLSSRRFMGLKARRRALAGRTG
HHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCC
CGVCGVEQLNDIGKPVQPLPFSQTFNLGNLDRALKHLNDFQPTGKLTGCTHAAAWVMPSG
CCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHEEECCCC
ELAGGHEDVGRHVALDKLLGRRATEGEEWRQGAALVSSRASYEMVQKSAMCGVEILFAVS
CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AATTLAVEVAERCNLTLVGFCKPGRATIYTHPQRLIAD
HHHHHHHHHHHHCCEEEEEECCCCCEEEEECCHHHHCC
>Mature Secondary Structure
MNNILSEEVLNVTDFTTSRQLTLWKREDLQSPQLDDVAEEVPVALVYNGISHVVMMASPK
CCCHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCHHHHHHHCCCCEEECCHHHEEEEECCC
DLTHFAMGFSLSEGIIDSPREIYGMDVVPSCNGLEVQIDLSSRRFMGLKARRRALAGRTG
HHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCC
CGVCGVEQLNDIGKPVQPLPFSQTFNLGNLDRALKHLNDFQPTGKLTGCTHAAAWVMPSG
CCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHEEECCCC
ELAGGHEDVGRHVALDKLLGRRATEGEEWRQGAALVSSRASYEMVQKSAMCGVEILFAVS
CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AATTLAVEVAERCNLTLVGFCKPGRATIYTHPQRLIAD
HHHHHHHHHHHHCCEEEEEECCCCCEEEEECCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA