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The map label for this gene is mtrC [H]

Identifier: 39546294

GI number: 39546294

Start: 397057

End: 398262

Strand: Reverse

Name: mtrC [H]

Synonym: STM0352.S

Alternate gene names: 39546294

Gene position: 398262-397057 (Counterclockwise)

Preceding gene: 16763745

Following gene: 16763731

Centisome position: 8.2

GC content: 60.78

Gene sequence:

>1206_bases
ATGTTGATAGCCGGCGTCATCGCCGCCATCGGGGGCGTGATTTACATGGCCGGCGAAGCACTATGGGATAAAGACAACGC
CGTCGGCCCCCCGGCCAGCGCGCCGCCTCCACCGTCGGTACCGGTTGCTAAAGCCCTTAGCCGTACACTCGCGCCTACGG
CGGAATTCACCGGTTTTCTGGCCGCGCCGGAAACCGTGGAGCTGCGTTCGCGCGTGGGAGGAACCCTTGACGCCATCAGC
GTTCCGGAAGGACGTCTGGTAAGCCGCGGACAACTGCTGTTCCAGATCGATCCGCGCCCGTTCGAGGTCGCCCTCGACAC
CGCCGTCGCGCAATTACGTCAGGCTGAAGTACTGGCCCGCCAGGCGCAGGCGGATTTCGATCGCATTCAACGACTGGTCG
CCAGCGGCGCCGTATCACGTAAAAACGCTGACGATGTCACCGCCACGCGTAATGCGCGACAGGCGCAGATGCAATCGGCC
AAAGCCGCCGTCGCCGCAGCGCGCCTTGAACTCTCCTGGACCCGTATTACCGCGCCCATTGCCGGACGCGTTGACCGCAT
ACTGGTGACCCGGGGCAATCTGGTCAGCGGCGGCGTAGCGGGTAACGCCACGCTTCTGACGACTATCGTGTCTCACAATC
CCATGTATGTGTATTTCGATATTGACGAAGCCACCTGGCTGAAGGCGTTACGGCATACCCGCTCCGACAAAAATCCACCG
GTAGTCAACATGGGGTTAACCACCGATAACGGGCTGCCTTATCAGGGCGTACTCGACTTTATGGGCAATCAGATGAACCG
CAGCACCGGCACTATCCGGGCACGCGCCGTGATTCCTGACCCCGACGGAATGCTTTCTCCCGGCCTGTTTGCCCGAATCA
GTTTGCCCATCGGCGAGCCGCGGGAAACCGTGCTGATTGACGATCTGGCGGTGAGCGCCGATCAGGGCAAAAACTATGTG
CTGATCGTCGGCAAGGAGAATCAGGTGGAGTATCGTCCGGTTGAGTTGGGACAAATGGTCGATGGATTCCGCGTCGTTAC
ACAGGGAGTACTGCCGGGAGAAAAAATCATCCTCAAGGGGCTGGTGCGTCCTGGCATGACCGTTGCGCCACGTCTGGTGC
CGATGCGGCAGAATGTGACCGACAAACAGACCGCGACATTGACTAAAGCGGACGGCGACAGTGCGCCGAAGGCGGTGCGC
CAATGA

Upstream 100 bases:

>100_bases
TGTAACGCCTAGCCTTTGCCAAAAATTCTGCGGCAGCGTTGCGGAATGGCCGACACGCTGCGGTAAAGAGGGAAACGACA
TGCGTAGAACATTCAAAATT

Downstream 100 bases:

>100_bases
AATTCACCCACTTTTTCATTGCACGCCCCATCTTCGCCATCGTCCTGTCGCTGTTAATGCTGCTGGCTGGCGCTATCGCC
TTTTTAAAACTGCCGCTGAG

Product: cation efflux pump

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MLIAGVIAAIGGVIYMAGEALWDKDNAVGPPASAPPPPSVPVAKALSRTLAPTAEFTGFLAAPETVELRSRVGGTLDAIS
VPEGRLVSRGQLLFQIDPRPFEVALDTAVAQLRQAEVLARQAQADFDRIQRLVASGAVSRKNADDVTATRNARQAQMQSA
KAAVAAARLELSWTRITAPIAGRVDRILVTRGNLVSGGVAGNATLLTTIVSHNPMYVYFDIDEATWLKALRHTRSDKNPP
VVNMGLTTDNGLPYQGVLDFMGNQMNRSTGTIRARAVIPDPDGMLSPGLFARISLPIGEPRETVLIDDLAVSADQGKNYV
LIVGKENQVEYRPVELGQMVDGFRVVTQGVLPGEKIILKGLVRPGMTVAPRLVPMRQNVTDKQTATLTKADGDSAPKAVR
Q

Sequences:

>Translated_401_residues
MLIAGVIAAIGGVIYMAGEALWDKDNAVGPPASAPPPPSVPVAKALSRTLAPTAEFTGFLAAPETVELRSRVGGTLDAIS
VPEGRLVSRGQLLFQIDPRPFEVALDTAVAQLRQAEVLARQAQADFDRIQRLVASGAVSRKNADDVTATRNARQAQMQSA
KAAVAAARLELSWTRITAPIAGRVDRILVTRGNLVSGGVAGNATLLTTIVSHNPMYVYFDIDEATWLKALRHTRSDKNPP
VVNMGLTTDNGLPYQGVLDFMGNQMNRSTGTIRARAVIPDPDGMLSPGLFARISLPIGEPRETVLIDDLAVSADQGKNYV
LIVGKENQVEYRPVELGQMVDGFRVVTQGVLPGEKIILKGLVRPGMTVAPRLVPMRQNVTDKQTATLTKADGDSAPKAVR
Q
>Mature_401_residues
MLIAGVIAAIGGVIYMAGEALWDKDNAVGPPASAPPPPSVPVAKALSRTLAPTAEFTGFLAAPETVELRSRVGGTLDAIS
VPEGRLVSRGQLLFQIDPRPFEVALDTAVAQLRQAEVLARQAQADFDRIQRLVASGAVSRKNADDVTATRNARQAQMQSA
KAAVAAARLELSWTRITAPIAGRVDRILVTRGNLVSGGVAGNATLLTTIVSHNPMYVYFDIDEATWLKALRHTRSDKNPP
VVNMGLTTDNGLPYQGVLDFMGNQMNRSTGTIRARAVIPDPDGMLSPGLFARISLPIGEPRETVLIDDLAVSADQGKNYV
LIVGKENQVEYRPVELGQMVDGFRVVTQGVLPGEKIILKGLVRPGMTVAPRLVPMRQNVTDKQTATLTKADGDSAPKAVR
Q

Specific function: Cell membrane lipoprotein, involved in cell membrane permeability to hydrophobic compounds such as antibiotics, dyes and detergents [H]

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1786668, Length=349, Percent_Identity=31.5186246418338, Blast_Score=145, Evalue=6e-36,
Organism=Escherichia coli, GI1789665, Length=341, Percent_Identity=32.258064516129, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1789929, Length=321, Percent_Identity=30.8411214953271, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI87082036, Length=354, Percent_Identity=29.9435028248588, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI87081796, Length=326, Percent_Identity=26.0736196319018, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081951, Length=173, Percent_Identity=30.0578034682081, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 42805; Mature: 42805

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIAGVIAAIGGVIYMAGEALWDKDNAVGPPASAPPPPSVPVAKALSRTLAPTAEFTGFL
CHHHHHHHHHHHHHEECCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCEEE
AAPETVELRSRVGGTLDAISVPEGRLVSRGQLLFQIDPRPFEVALDTAVAQLRQAEVLAR
CCCCHHHHHHHCCCCEEEEECCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
QAQADFDRIQRLVASGAVSRKNADDVTATRNARQAQMQSAKAAVAAARLELSWTRITAPI
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHEEEEEEEEECCH
AGRVDRILVTRGNLVSGGVAGNATLLTTIVSHNPMYVYFDIDEATWLKALRHTRSDKNPP
HCCCEEEEEECCCEEECCCCCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCCCC
VVNMGLTTDNGLPYQGVLDFMGNQMNRSTGTIRARAVIPDPDGMLSPGLFARISLPIGEP
EEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCC
RETVLIDDLAVSADQGKNYVLIVGKENQVEYRPVELGQMVDGFRVVTQGVLPGEKIILKG
CCEEEEEEEEEECCCCCCEEEEEECCCCCEECCHHHHHHHHHHHHHHHCCCCCHHHHHHH
LVRPGMTVAPRLVPMRQNVTDKQTATLTKADGDSAPKAVRQ
HCCCCCCCCCCEEECCCCCCCCHHEEEEECCCCCCCHHHCC
>Mature Secondary Structure
MLIAGVIAAIGGVIYMAGEALWDKDNAVGPPASAPPPPSVPVAKALSRTLAPTAEFTGFL
CHHHHHHHHHHHHHEECCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCEEE
AAPETVELRSRVGGTLDAISVPEGRLVSRGQLLFQIDPRPFEVALDTAVAQLRQAEVLAR
CCCCHHHHHHHCCCCEEEEECCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
QAQADFDRIQRLVASGAVSRKNADDVTATRNARQAQMQSAKAAVAAARLELSWTRITAPI
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHEEEEEEEEECCH
AGRVDRILVTRGNLVSGGVAGNATLLTTIVSHNPMYVYFDIDEATWLKALRHTRSDKNPP
HCCCEEEEEECCCEEECCCCCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCCCC
VVNMGLTTDNGLPYQGVLDFMGNQMNRSTGTIRARAVIPDPDGMLSPGLFARISLPIGEP
EEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCC
RETVLIDDLAVSADQGKNYVLIVGKENQVEYRPVELGQMVDGFRVVTQGVLPGEKIILKG
CCEEEEEEEEEECCCCCCEEEEEECCCCCEECCHHHHHHHHHHHHHHHCCCCCHHHHHHH
LVRPGMTVAPRLVPMRQNVTDKQTATLTKADGDSAPKAVRQ
HCCCCCCCCCCEEECCCCCCCCHHEEEEECCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8196548 [H]