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The map label for this gene is yhcF [H]

Identifier: 16767816

GI number: 16767816

Start: 4830411

End: 4831100

Strand: Reverse

Name: yhcF [H]

Synonym: STM4575

Alternate gene names: 16767816

Gene position: 4831100-4830411 (Counterclockwise)

Preceding gene: 16767817

Following gene: 16767815

Centisome position: 99.46

GC content: 46.67

Gene sequence:

>690_bases
ATGAAAAAATTATTAATAGCGACCTCTGTCATAATAGGATTATCAACTTCAGCGCAAGCGGTTGAATCCACTGCTGTATT
AAAACTGACTGGCGTTTTAACCAACGGCGCATGTATACCAGAGTTAAGTGATGGTGGCGTTGTAGATTTCGGTACTAAGG
CCGTTAGCGATCTGCTGCCAACTCAGACGAATCAACTGGGATACAAAGATATAACACTCACGATTCAGTGCCTTGCACCG
GCAAAAGTTGGCTGGGTCGCTACCGACAATCATGGCGATTCGGCGACAACGCTGACTATCGATAACGCAACATTTGGCGG
TCAGAACAATAGAATACCAAACTATCAGCTAGGCCTGGGTACAACAGCAGATGGTATCAAGATTGGTGCATACGGCCTCT
CCATAGACGCGAATAATTCGACCGCCGATGGAGTTAAGACGAAGATGGTAGCGTCAAATGATTCGAATCCTGGTGTCTGG
GCTTTAGCATCAAACGAATACGTTGCGCTTACAAATACATTTCCAACCCGCACTACATATAGTGTCGGCGATGGAAATGG
CCCCGTTGCTTTTACCACCGCAACATTTCCTATACGCGTAGCTGCCGCTATACAGGGAACGGACACACTGGCTATTACCG
ATAACACCACGCTTGATGGTCAGGCGACCTTTACACTCGTATATCTGTAA

Upstream 100 bases:

>100_bases
TTTAATTTTATTAAATTTACAACATATCATTATCTTCATAGAATCCCGACCCGCGCATTACATGTCATTTGGAAATATAC
TTAATCGTTAGGGATTACTG

Downstream 100 bases:

>100_bases
CTCCAGCATTCACATGGAATATTCAACACCTCTTTAATGGAACTATAATGAAAAAAATTTTGCTTATTACTGCAATTGCA
GCTTCCTTTGCTACAACCAG

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKKLLIATSVIIGLSTSAQAVESTAVLKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLPTQTNQLGYKDITLTIQCLAP
AKVGWVATDNHGDSATTLTIDNATFGGQNNRIPNYQLGLGTTADGIKIGAYGLSIDANNSTADGVKTKMVASNDSNPGVW
ALASNEYVALTNTFPTRTTYSVGDGNGPVAFTTATFPIRVAAAIQGTDTLAITDNTTLDGQATFTLVYL

Sequences:

>Translated_229_residues
MKKLLIATSVIIGLSTSAQAVESTAVLKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLPTQTNQLGYKDITLTIQCLAP
AKVGWVATDNHGDSATTLTIDNATFGGQNNRIPNYQLGLGTTADGIKIGAYGLSIDANNSTADGVKTKMVASNDSNPGVW
ALASNEYVALTNTFPTRTTYSVGDGNGPVAFTTATFPIRVAAAIQGTDTLAITDNTTLDGQATFTLVYL
>Mature_229_residues
MKKLLIATSVIIGLSTSAQAVESTAVLKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLPTQTNQLGYKDITLTIQCLAP
AKVGWVATDNHGDSATTLTIDNATFGGQNNRIPNYQLGLGTTADGIKIGAYGLSIDANNSTADGVKTKMVASNDSNPGVW
ALASNEYVALTNTFPTRTTYSVGDGNGPVAFTTATFPIRVAAAIQGTDTLAITDNTTLDGQATFTLVYL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli gltF [H]

Homologues:

Organism=Escherichia coli, GI1789613, Length=252, Percent_Identity=30.952380952381, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1789608, Length=252, Percent_Identity=31.3492063492063, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010546 [H]

Pfam domain/function: PF06551 DUF1120 [H]

EC number: NA

Molecular weight: Translated: 23597; Mature: 23597

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLIATSVIIGLSTSAQAVESTAVLKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLP
CCEEEEEEEEEEECCCCHHHHCCEEEEEEEEEEECCEECCCCCCCCEEEECHHHHHHHCC
TQTNQLGYKDITLTIQCLAPAKVGWVATDNHGDSATTLTIDNATFGGQNNRIPNYQLGLG
CCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCEEEEEEECCEECCCCCCCCCEEEECC
TTADGIKIGAYGLSIDANNSTADGVKTKMVASNDSNPGVWALASNEYVALTNTFPTRTTY
CCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEECCCEEEEEECCCCCEEE
SVGDGNGPVAFTTATFPIRVAAAIQGTDTLAITDNTTLDGQATFTLVYL
EECCCCCCEEEEEEECEEEEEEEECCCCEEEEECCCEECCCEEEEEEEC
>Mature Secondary Structure
MKKLLIATSVIIGLSTSAQAVESTAVLKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLP
CCEEEEEEEEEEECCCCHHHHCCEEEEEEEEEEECCEECCCCCCCCEEEECHHHHHHHCC
TQTNQLGYKDITLTIQCLAPAKVGWVATDNHGDSATTLTIDNATFGGQNNRIPNYQLGLG
CCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCEEEEEEECCEECCCCCCCCCEEEECC
TTADGIKIGAYGLSIDANNSTADGVKTKMVASNDSNPGVWALASNEYVALTNTFPTRTTY
CCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEECCCEEEEEECCCCCEEE
SVGDGNGPVAFTTATFPIRVAAAIQGTDTLAITDNTTLDGQATFTLVYL
EECCCCCCEEEEEEECEEEEEEEECCCCEEEEECCCEECCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]