Click here to switch to the map view.

The map label for this gene is ytfE [H]

Identifier: 16767645

GI number: 16767645

Start: 4636369

End: 4637031

Strand: Reverse

Name: ytfE [H]

Synonym: STM4399

Alternate gene names: 16767645

Gene position: 4637031-4636369 (Counterclockwise)

Preceding gene: 16767646

Following gene: 16767642

Centisome position: 95.46

GC content: 54.9

Gene sequence:

>663_bases
ATGGCTTATCGCGATCAACCTTTAGGCGAACTGGCGCTCTCTATTCCCCGCGCATCGGCGCTGTTTCGCCAGTACGATAT
GGATTACTGCTGCGGCGGAAAACAGACGCTGGCGCGCGCCGCCGCGCGTCACGACGTCGATATTGACATCATAGAAGCGC
AACTGGCGCAGTTGGCTGAACAGCCCATCGAAAAAGACTGGCGCGCCGTTCCGCTGGCGGACATTATTGACCATATCGTT
GTTCGCTATCATGACCGACATCGCGAACAACTGCCGGAGCTTATTCTGCAGGCAACCAAAGTGGAACGCGTCCACGCGGA
TAAGCCAAACGTCCCACGCGGCCTGACAAAATATCTCACCGCGCTGCATGAAGAGCTTTCCAGCCATATGATGAAAGAAG
AACAGATCCTGTTCCCCATGATCAAACAGGGTATGGGTCGCCAGGCAACGGGCCCGATAAGCGTAATGGAAAGCGAGCAT
GACGAGGCGGGAGAGCTGGTAGACGTCATCAAACACGTCACCAAAAATGTAACGCCGCCGCCAGAAGCCTGCACCACCTG
GAAAGCGATGTATAACGGCATTAATGAGATGATTGATGATCTGATGGAGCACATCAGCCTGGAGAATAACGTGCTGTTCC
CACGCGCGCTGGCCGGGGAATAA

Upstream 100 bases:

>100_bases
TCATACTCGCTTAAATTATACGCACCCCGAAAGAGTTATAGCTTCGCCTTAAAGATGCATTTAAAATACAACTTATATTA
TTGCAAATGAGGTAACGGCT

Downstream 100 bases:

>100_bases
TCGCCAGCCGGGCATTTTGCCGGATGGCGGCTGTAAACGGCGCCTTATCCGGCCTCCAAATCAACGTTACGCTGTAAGCC
CGGTAAGCGCCAGCGCCACC

Product: iron-sulfur cluster repair di-iron protein

Products: NA

Alternate protein names: RCMNS [H]

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MAYRDQPLGELALSIPRASALFRQYDMDYCCGGKQTLARAAARHDVDIDIIEAQLAQLAEQPIEKDWRAVPLADIIDHIV
VRYHDRHREQLPELILQATKVERVHADKPNVPRGLTKYLTALHEELSSHMMKEEQILFPMIKQGMGRQATGPISVMESEH
DEAGELVDVIKHVTKNVTPPPEACTTWKAMYNGINEMIDDLMEHISLENNVLFPRALAGE

Sequences:

>Translated_220_residues
MAYRDQPLGELALSIPRASALFRQYDMDYCCGGKQTLARAAARHDVDIDIIEAQLAQLAEQPIEKDWRAVPLADIIDHIV
VRYHDRHREQLPELILQATKVERVHADKPNVPRGLTKYLTALHEELSSHMMKEEQILFPMIKQGMGRQATGPISVMESEH
DEAGELVDVIKHVTKNVTPPPEACTTWKAMYNGINEMIDDLMEHISLENNVLFPRALAGE
>Mature_219_residues
AYRDQPLGELALSIPRASALFRQYDMDYCCGGKQTLARAAARHDVDIDIIEAQLAQLAEQPIEKDWRAVPLADIIDHIVV
RYHDRHREQLPELILQATKVERVHADKPNVPRGLTKYLTALHEELSSHMMKEEQILFPMIKQGMGRQATGPISVMESEHD
EAGELVDVIKHVTKNVTPPPEACTTWKAMYNGINEMIDDLMEHISLENNVLFPRALAGE

Specific function: Involved in anaerobic NO protection [H]

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790654, Length=220, Percent_Identity=89.0909090909091, Blast_Score=421, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312 [H]

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N [H]

EC number: NA

Molecular weight: Translated: 24911; Mature: 24780

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYRDQPLGELALSIPRASALFRQYDMDYCCGGKQTLARAAARHDVDIDIIEAQLAQLAE
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
QPIEKDWRAVPLADIIDHIVVRYHDRHREQLPELILQATKVERVHADKPNVPRGLTKYLT
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ALHEELSSHMMKEEQILFPMIKQGMGRQATGPISVMESEHDEAGELVDVIKHVTKNVTPP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCC
PEACTTWKAMYNGINEMIDDLMEHISLENNVLFPRALAGE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCC
>Mature Secondary Structure 
AYRDQPLGELALSIPRASALFRQYDMDYCCGGKQTLARAAARHDVDIDIIEAQLAQLAE
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
QPIEKDWRAVPLADIIDHIVVRYHDRHREQLPELILQATKVERVHADKPNVPRGLTKYLT
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ALHEELSSHMMKEEQILFPMIKQGMGRQATGPISVMESEHDEAGELVDVIKHVTKNVTPP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCC
PEACTTWKAMYNGINEMIDDLMEHISLENNVLFPRALAGE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA