Click here to switch to the map view.

The map label for this gene is yjdC [H]

Identifier: 16767571

GI number: 16767571

Start: 4566770

End: 4567345

Strand: Reverse

Name: yjdC [H]

Synonym: STM4322

Alternate gene names: 16767571

Gene position: 4567345-4566770 (Counterclockwise)

Preceding gene: 16767572

Following gene: 16767569

Centisome position: 94.03

GC content: 51.56

Gene sequence:

>576_bases
GTGCAACGTGAAGATATTCTGGGAGAAGCCCTGAAATTACTGGAGACGCAAGGGATAGCCGATACTACGCTGGAAATGGT
GGCGGAGCGCGTAAATCGCCCACTCGACACATTACAGCGTTTCTGGCCAGATAAAGAAGCCATTTTATATGACGCGCTAC
GTTATCTGAGTCAGCAGGTAGATATCTGGCGACGCCAGCTTCTTCTTGATGAGACGCTTTCTGCTGAACAAAAGCTACTG
GCACGCTACAGCGCGCTTTCGGAATGTGTCAGTAATAACCGTTATCCTGGTTGCTTGTTCATTGCCGCCTGTACGTTTTA
TCCCGACCCAACCCATCCTATTCACCAACTGGCTAATCAACAAAAACGCGCGGCACATGATTTTACCCATGAGCTACTGA
CCACGCTGGAAATTGACGATCCGGCGATGGTTGCAAGGCAGATGGAGCTGGTGCTGGAAGGTTGTCTCAGCCGAATGCTG
GTCAACCGCAGTCAGGCTGATGTAGATACCGCTCAGCGGTTGGCGGAAGATATTCTGCGTTTTGCACAGTGCCGTCAGGG
TGGAGCGCTCACCTGA

Upstream 100 bases:

>100_bases
GCGAGTCACCGGCTTTATGGACGCCGCCACCTTTAGCGCGCATTTGCACGATCGCCAACCGTGAGCGACACTTGCAAAAG
CAAAGACGGAGGAGAATACC

Downstream 100 bases:

>100_bases
CGGGTACTGATTTTATGCATTTTGCCTGAAAAGCAGGCAGTCAGCGCGCTTTTATCACTTTTTTCGTGTAAAGCCGTTGA
CGACCGCGCCCCTTTACGGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MQREDILGEALKLLETQGIADTTLEMVAERVNRPLDTLQRFWPDKEAILYDALRYLSQQVDIWRRQLLLDETLSAEQKLL
ARYSALSECVSNNRYPGCLFIAACTFYPDPTHPIHQLANQQKRAAHDFTHELLTTLEIDDPAMVARQMELVLEGCLSRML
VNRSQADVDTAQRLAEDILRFAQCRQGGALT

Sequences:

>Translated_191_residues
MQREDILGEALKLLETQGIADTTLEMVAERVNRPLDTLQRFWPDKEAILYDALRYLSQQVDIWRRQLLLDETLSAEQKLL
ARYSALSECVSNNRYPGCLFIAACTFYPDPTHPIHQLANQQKRAAHDFTHELLTTLEIDDPAMVARQMELVLEGCLSRML
VNRSQADVDTAQRLAEDILRFAQCRQGGALT
>Mature_191_residues
MQREDILGEALKLLETQGIADTTLEMVAERVNRPLDTLQRFWPDKEAILYDALRYLSQQVDIWRRQLLLDETLSAEQKLL
ARYSALSECVSNNRYPGCLFIAACTFYPDPTHPIHQLANQQKRAAHDFTHELLTTLEIDDPAMVARQMELVLEGCLSRML
VNRSQADVDTAQRLAEDILRFAQCRQGGALT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082374, Length=191, Percent_Identity=88.4816753926702, Blast_Score=355, Evalue=1e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21832; Mature: 21832

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQREDILGEALKLLETQGIADTTLEMVAERVNRPLDTLQRFWPDKEAILYDALRYLSQQV
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
DIWRRQLLLDETLSAEQKLLARYSALSECVSNNRYPGCLFIAACTFYPDPTHPIHQLANQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
QKRAAHDFTHELLTTLEIDDPAMVARQMELVLEGCLSRMLVNRSQADVDTAQRLAEDILR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FAQCRQGGALT
HHHHHCCCCCC
>Mature Secondary Structure
MQREDILGEALKLLETQGIADTTLEMVAERVNRPLDTLQRFWPDKEAILYDALRYLSQQV
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
DIWRRQLLLDETLSAEQKLLARYSALSECVSNNRYPGCLFIAACTFYPDPTHPIHQLANQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
QKRAAHDFTHELLTTLEIDDPAMVARQMELVLEGCLSRMLVNRSQADVDTAQRLAEDILR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FAQCRQGGALT
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]