Click here to switch to the map view.

The map label for this gene is ydeY [H]

Identifier: 16767341

GI number: 16767341

Start: 4285030

End: 4286073

Strand: Direct

Name: ydeY [H]

Synonym: STM4075

Alternate gene names: 16767341

Gene position: 4285030-4286073 (Clockwise)

Preceding gene: 16767340

Following gene: 16767342

Centisome position: 88.22

GC content: 52.78

Gene sequence:

>1044_bases
ATGTTGAAATTCATCCAAAATAACCGGGAAGCGACGGCACTGCTGGCAATAGTCTGTTTATTCGTGTTTCCTGGCGCGCT
GGATAGTCAGTATTTGAGCGTGCAAACGCTGACAATGGTTTTCAGTAGCGCGCAAATTTTGATGCTGTTGGCGATTGGCG
CGACGATGGTAATGCTCACCCGCAATATTGATGTATCGGTGGGCTCGACGACAGGAATGTGCGCGGTATTGCTGGGAGTG
ATGTTAAACGCCGGCTATAGCCTGCCGGTCGCCTGCCTGGCCACACTAATATTAGGAATTGTCGCCGGATTTTTTAATGG
CGTACTGGTTGCCTGGTTGAAGATACCCGCCATTGTCGCCACTCTGGGAACGCTGGGCTTGTATCGTGGGATCATGCTGC
TATGGACAGGGGGGAAATGGATTGAAGGATTACCCGCAGGCTTAAAGCAACTCTCTGCTCCGGTGTTTCTGGGAATTTCC
GCAATCGGCTGGTTTACCCTGGTGTTAGCGCTGCTTATGGCCTGGCTCCTGGCGAAAACCGCCTTTGGCCGCAATTTTTA
CGCCACCGGCGATAACCTGCAGGGCGCCCGGCAATTGGGTGTCCGTACCGAGATGGTACGCATCATGGCATTTTCACTTA
ATGGCGGTATGGCGGCATTGGCTGGAATCGTGTTTGCCTCGCAGATTGGCTTCATTCCCAATCAAACCGGCACGGGGCTG
GAAATGAAAGCCATCGCGGCCTGCGTATTGGGGGGAATTAGCCTGTTAGGCGGGTCAGGCACGGTCATCGGCGCTATTCT
CGGCGCTTATTTTCTTACGCAAATCGATAGTGTGTTAGTGCTGCTGCGTATCCCCGCCTGGTGGAACGATTTTATTGCTG
GCCTGGTATTGTTGGGCGTACTGGTATTCGATGGGCGGCTGCGTTGCGCATTACAACGCAATCTGCGCCGCCAGAAATAT
GCCCGTTTTATATCACCACCCACTCCACTACAGACGGAAGCAAAAACGCACGCACAACAGAATAAAAACAAAGAGGTGGC
ATGA

Upstream 100 bases:

>100_bases
ACCAGGGGGAACTGGGGGGGCCTGCGTTATGCGGCGAGGAAATTAACGTTGATACCATCATGCACGTTGCGTTTGGCGAA
CATGGTGCGTCGGAGGCAAC

Downstream 100 bases:

>100_bases
TGAATCCATGGCGACGCTATAGCTGGGAAATTGCGCTGGCAGCCTTATTGATCTTTGAAATTCTGGCTTTCGGTCTGATT
AATCCACGTTTATTAGATAT

Product: sugar transport protein

Products: NA

Alternate protein names: AI-2 import system permease protein lsrC [H]

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MLKFIQNNREATALLAIVCLFVFPGALDSQYLSVQTLTMVFSSAQILMLLAIGATMVMLTRNIDVSVGSTTGMCAVLLGV
MLNAGYSLPVACLATLILGIVAGFFNGVLVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAGLKQLSAPVFLGIS
AIGWFTLVLALLMAWLLAKTAFGRNFYATGDNLQGARQLGVRTEMVRIMAFSLNGGMAALAGIVFASQIGFIPNQTGTGL
EMKAIAACVLGGISLLGGSGTVIGAILGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFDGRLRCALQRNLRRQKY
ARFISPPTPLQTEAKTHAQQNKNKEVA

Sequences:

>Translated_347_residues
MLKFIQNNREATALLAIVCLFVFPGALDSQYLSVQTLTMVFSSAQILMLLAIGATMVMLTRNIDVSVGSTTGMCAVLLGV
MLNAGYSLPVACLATLILGIVAGFFNGVLVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAGLKQLSAPVFLGIS
AIGWFTLVLALLMAWLLAKTAFGRNFYATGDNLQGARQLGVRTEMVRIMAFSLNGGMAALAGIVFASQIGFIPNQTGTGL
EMKAIAACVLGGISLLGGSGTVIGAILGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFDGRLRCALQRNLRRQKY
ARFISPPTPLQTEAKTHAQQNKNKEVA
>Mature_347_residues
MLKFIQNNREATALLAIVCLFVFPGALDSQYLSVQTLTMVFSSAQILMLLAIGATMVMLTRNIDVSVGSTTGMCAVLLGV
MLNAGYSLPVACLATLILGIVAGFFNGVLVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAGLKQLSAPVFLGIS
AIGWFTLVLALLMAWLLAKTAFGRNFYATGDNLQGARQLGVRTEMVRIMAFSLNGGMAALAGIVFASQIGFIPNQTGTGL
EMKAIAACVLGGISLLGGSGTVIGAILGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFDGRLRCALQRNLRRQKY
ARFISPPTPLQTEAKTHAQQNKNKEVA

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787793, Length=347, Percent_Identity=83.8616714697406, Blast_Score=528, Evalue=1e-151,
Organism=Escherichia coli, GI1789992, Length=350, Percent_Identity=30, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1790191, Length=309, Percent_Identity=29.7734627831715, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI145693152, Length=303, Percent_Identity=31.3531353135314, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI87082395, Length=327, Percent_Identity=30.8868501529052, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1788896, Length=302, Percent_Identity=31.4569536423841, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1790524, Length=290, Percent_Identity=27.2413793103448, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787794, Length=312, Percent_Identity=30.7692307692308, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI145693214, Length=284, Percent_Identity=33.8028169014084, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1788471, Length=336, Percent_Identity=29.1666666666667, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36927; Mature: 36927

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFIQNNREATALLAIVCLFVFPGALDSQYLSVQTLTMVFSSAQILMLLAIGATMVMLT
CCCCHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNIDVSVGSTTGMCAVLLGVMLNAGYSLPVACLATLILGIVAGFFNGVLVAWLKIPAIVA
CCCCEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGTLGLYRGIMLLWTGGKWIEGLPAGLKQLSAPVFLGISAIGWFTLVLALLMAWLLAKT
HHHHHHHHHHHHEEECCCHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFGRNFYATGDNLQGARQLGVRTEMVRIMAFSLNGGMAALAGIVFASQIGFIPNQTGTGL
HHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
EMKAIAACVLGGISLLGGSGTVIGAILGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LVFDGRLRCALQRNLRRQKYARFISPPTPLQTEAKTHAQQNKNKEVA
HHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLKFIQNNREATALLAIVCLFVFPGALDSQYLSVQTLTMVFSSAQILMLLAIGATMVMLT
CCCCHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNIDVSVGSTTGMCAVLLGVMLNAGYSLPVACLATLILGIVAGFFNGVLVAWLKIPAIVA
CCCCEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGTLGLYRGIMLLWTGGKWIEGLPAGLKQLSAPVFLGISAIGWFTLVLALLMAWLLAKT
HHHHHHHHHHHHEEECCCHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFGRNFYATGDNLQGARQLGVRTEMVRIMAFSLNGGMAALAGIVFASQIGFIPNQTGTGL
HHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
EMKAIAACVLGGISLLGGSGTVIGAILGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LVFDGRLRCALQRNLRRQKYARFISPPTPLQTEAKTHAQQNKNKEVA
HHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA