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The map label for this gene is ydeZ [H]

Identifier: 16767342

GI number: 16767342

Start: 4286070

End: 4287071

Strand: Direct

Name: ydeZ [H]

Synonym: STM4076

Alternate gene names: 16767342

Gene position: 4286070-4287071 (Clockwise)

Preceding gene: 16767341

Following gene: 16767343

Centisome position: 88.24

GC content: 49.5

Gene sequence:

>1002_bases
ATGATGAATCCATGGCGACGCTATAGCTGGGAAATTGCGCTGGCAGCCTTATTGATCTTTGAAATTCTGGCTTTCGGTCT
GATTAATCCACGTTTATTAGATATTAATGTCTTACTTTTTAGCACTAGCGATTTTATTTGTATCGGTATTGTCGCTTTGC
CGCTAACAATGGTTATTGTCAGCGGTGGTATGGATATTTCATTTGGTTCTACAATCGGGCTATGCGCGATTACCCTGGGT
GTGCTGTTTCAGCTCGGTATGCCGCTACCTTTAGCGATTATTATTACCCTACTACTTGGCGCAATATGTGGGCTGATAAA
TGCCGGACTTATTATTTATACCGGCGTAAACCCGTTGGTGATTACCCTGGGAACCATGTATTTATTTGGTGGTAGCGCAT
TATTGTTATCTGGTATGGCTGGCGCCACGGGTTATGAAGGTATTGGTGGATTTCCCACAGCGTTCACTGACTTTGCCAAT
ATTTCATTTCTTGGTATTCCCATGCCGCTTATTTTTTTTCTTGTGTGCTGTCTGTTTTTCTGGCTGCTCATGCATCGTAC
GCATATGGGACGCAACGTTTTCCTGATTGGCCAGAGCGCCCGTGTCGCGCAGTACAGCGCGATCCCGGTGAATCGCACGT
TGTATACCGTGTATGCCATGACCGGATGCGCCTCCGCGATCGCCGCCGTATTACTGGTTTCTTACTTTGGCTCCGCACGT
TCGGATCTGGGCGCCTCTTTCCTGATGCCGGCCATTACGGCGGTTGTGCTGGGAGGCGCCAATATTTATGGCGGCTCCGG
GTCGATTATGGGGTCCGCGTTGGCGGCGCTGCTGGTGGGATTTTTACAGCAGGGGCTACAGATGGCCGGAGTGCCGAATC
AAATTTCCAGCGCATTGTCCGGTGCGCTTCTCATTGTTGTTGTCGTTGGTCGTTCCGTCAGTTTGCATCGTCACCAAATC
CTTGAATGGTACTCACGCCGTCGCAATGCGCATCAGGCATGA

Upstream 100 bases:

>100_bases
ATCTGCGCCGCCAGAAATATGCCCGTTTTATATCACCACCCACTCCACTACAGACGGAAGCAAAAACGCACGCACAACAG
AATAAAAACAAAGAGGTGGC

Downstream 100 bases:

>100_bases
TTTCCTTTTGAAATTTATGGAGAAAAAAATGGCAAGACACAGCATTAAAATGATCGCCTTACTCACTGCGTTTGGTCTGG
CATCTGCGGCAATGACCGTG

Product: sugar transport protein

Products: NA

Alternate protein names: AI-2 import system permease protein lsrD [H]

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MMNPWRRYSWEIALAALLIFEILAFGLINPRLLDINVLLFSTSDFICIGIVALPLTMVIVSGGMDISFGSTIGLCAITLG
VLFQLGMPLPLAIIITLLLGAICGLINAGLIIYTGVNPLVITLGTMYLFGGSALLLSGMAGATGYEGIGGFPTAFTDFAN
ISFLGIPMPLIFFLVCCLFFWLLMHRTHMGRNVFLIGQSARVAQYSAIPVNRTLYTVYAMTGCASAIAAVLLVSYFGSAR
SDLGASFLMPAITAVVLGGANIYGGSGSIMGSALAALLVGFLQQGLQMAGVPNQISSALSGALLIVVVVGRSVSLHRHQI
LEWYSRRRNAHQA

Sequences:

>Translated_333_residues
MMNPWRRYSWEIALAALLIFEILAFGLINPRLLDINVLLFSTSDFICIGIVALPLTMVIVSGGMDISFGSTIGLCAITLG
VLFQLGMPLPLAIIITLLLGAICGLINAGLIIYTGVNPLVITLGTMYLFGGSALLLSGMAGATGYEGIGGFPTAFTDFAN
ISFLGIPMPLIFFLVCCLFFWLLMHRTHMGRNVFLIGQSARVAQYSAIPVNRTLYTVYAMTGCASAIAAVLLVSYFGSAR
SDLGASFLMPAITAVVLGGANIYGGSGSIMGSALAALLVGFLQQGLQMAGVPNQISSALSGALLIVVVVGRSVSLHRHQI
LEWYSRRRNAHQA
>Mature_333_residues
MMNPWRRYSWEIALAALLIFEILAFGLINPRLLDINVLLFSTSDFICIGIVALPLTMVIVSGGMDISFGSTIGLCAITLG
VLFQLGMPLPLAIIITLLLGAICGLINAGLIIYTGVNPLVITLGTMYLFGGSALLLSGMAGATGYEGIGGFPTAFTDFAN
ISFLGIPMPLIFFLVCCLFFWLLMHRTHMGRNVFLIGQSARVAQYSAIPVNRTLYTVYAMTGCASAIAAVLLVSYFGSAR
SDLGASFLMPAITAVVLGGANIYGGSGSIMGSALAALLVGFLQQGLQMAGVPNQISSALSGALLIVVVVGRSVSLHRHQI
LEWYSRRRNAHQA

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=323, Percent_Identity=83.9009287925697, Blast_Score=506, Evalue=1e-145,
Organism=Escherichia coli, GI1790524, Length=309, Percent_Identity=29.126213592233, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1788896, Length=313, Percent_Identity=27.7955271565495, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1788471, Length=221, Percent_Identity=33.0316742081448, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI145693152, Length=261, Percent_Identity=29.1187739463602, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787793, Length=304, Percent_Identity=28.6184210526316, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI145693214, Length=274, Percent_Identity=25.9124087591241, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082395, Length=302, Percent_Identity=24.1721854304636, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789992, Length=133, Percent_Identity=33.8345864661654, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35265; Mature: 35265

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNPWRRYSWEIALAALLIFEILAFGLINPRLLDINVLLFSTSDFICIGIVALPLTMVIV
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHH
SGGMDISFGSTIGLCAITLGVLFQLGMPLPLAIIITLLLGAICGLINAGLIIYTGVNPLV
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHH
ITLGTMYLFGGSALLLSGMAGATGYEGIGGFPTAFTDFANISFLGIPMPLIFFLVCCLFF
HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHHHHHH
WLLMHRTHMGRNVFLIGQSARVAQYSAIPVNRTLYTVYAMTGCASAIAAVLLVSYFGSAR
HHHHHHHHCCCEEEEEECCCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
SDLGASFLMPAITAVVLGGANIYGGSGSIMGSALAALLVGFLQQGLQMAGVPNQISSALS
HHCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GALLIVVVVGRSVSLHRHQILEWYSRRRNAHQA
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MMNPWRRYSWEIALAALLIFEILAFGLINPRLLDINVLLFSTSDFICIGIVALPLTMVIV
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHH
SGGMDISFGSTIGLCAITLGVLFQLGMPLPLAIIITLLLGAICGLINAGLIIYTGVNPLV
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHH
ITLGTMYLFGGSALLLSGMAGATGYEGIGGFPTAFTDFANISFLGIPMPLIFFLVCCLFF
HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHHHHHH
WLLMHRTHMGRNVFLIGQSARVAQYSAIPVNRTLYTVYAMTGCASAIAAVLLVSYFGSAR
HHHHHHHHCCCEEEEEECCCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
SDLGASFLMPAITAVVLGGANIYGGSGSIMGSALAALLVGFLQQGLQMAGVPNQISSALS
HHCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GALLIVVVVGRSVSLHRHQILEWYSRRRNAHQA
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA