Click here to switch to the map view.

The map label for this gene is dgoD [H]

Identifier: 16767118

GI number: 16767118

Start: 4036632

End: 4037825

Strand: Direct

Name: dgoD [H]

Synonym: STM3833

Alternate gene names: 16767118

Gene position: 4036632-4037825 (Clockwise)

Preceding gene: 16767117

Following gene: 16767119

Centisome position: 83.1

GC content: 54.36

Gene sequence:

>1194_bases
ATGATGAAAATTACCAGCGTTGATATTATTGATGTGGCGAACGATTTTGCGTCCGCCACCAGCAAATGGCGTCCGGTGGT
GGTAAAAATTAATACCGATGAGGGCATTTCCGGTTTTGGCGAAGTTGGGCTGGCTTACGGCGTCGGCGCTTCTGCGGGCA
TCGGAATGGCGAAGGACCTGTCGGCCATTATCATCGGCATGGACCCGATGAATAACGAAGCTATCTGGGAAAAAATGCTC
AAAAAAACCTTCTGGGGGCAGGGCGGCGGCGGCATCTTTTCCGCTGCGATGAGCGGCATCGATATCGCGCTGTGGGATAT
CAAAGGCAAAGCGTGGGGCGTGCCGCTGTATAAAATGCTTGGCGGCAAAAGTCGCGAGAAAATAAGAACCTACGCCAGTC
AGCTACAGTTTGGTTGGGGGGACGGCAGCGATAAAGATATGCTGACCGAGCCGGAGCAGTATGCACAGGCGGCGCTGACC
GCCGTCAGCGAAGGCTATGACGCAATAAAAGTGGATACCGTCGCAATGGATCGCCACGGCAACTGGAACCAGCAAAACCT
CAACGGGCCTCTCACCGATAAAATCCTGCGTCTGGGCTACGACCGTATGGCCGCCATTCGCGATGCAGTCGGCCCGGACG
TGGATATCATCGCCGAAATGCATGCCTTTACGGATACCACCTCGGCGATTCAGTTTGGCCGCATGATCGAAGAACTGGGC
ATCTTCTACTACGAAGAGCCGGTCATGCCGTTGAACCCCGCGCAGATGAAGCAGGTTGCCGATAAGGTCAATATTCCGCT
GGCGGCTGGCGAACGCATTTACTGGCGCTGGGGATACCGTCCTTTCCTGGAAAACGGCAGCCTGAGCGTGATCCAGCCCG
ATATTTGTACCTGCGGCGGCATCACCGAAGTGAAGAAAATCTGCGATATGGCGCATGTTTATGACAAAACGGTGCAAATC
CACGTTTGCGGCGGGCCGATTTCCACAGCGGTGGCGCTGCATATGGAAACCGCAATCCCTAACTTCGTCATCCACGAACT
GCACCGGTATGCGCTGCTGGAGCCGAATACACAGACCTGTAAATACAACTACCTGCCGAAGAACGGCATGTACGAAGTCC
CGGAGCTTCCCGGCATCGGCCAGGAACTGACCGAAGAAACCATGAAAAAATCACCAACCATCACCGTAAAATAA

Upstream 100 bases:

>100_bases
ACTTATACCGGCGGCTTACTATGCCTGGTTTTTATCAGCGCTATCGCCGTGGTATCGGCATTAATCTTAACGATTAAAAA
ATATTAATTACGAGGAGTAA

Downstream 100 bases:

>100_bases
GCCAACTGTCTGCCTGCGCCGCAGGCAGACACCCTGTATTTGCGAGTCGTATCAACGCGACCTTATCCAGCCTGAGATAA
AATCCTCTCAGTAAAGGGGT

Product: mandelate racemase

Products: NA

Alternate protein names: GalD [H]

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MMKITSVDIIDVANDFASATSKWRPVVVKINTDEGISGFGEVGLAYGVGASAGIGMAKDLSAIIIGMDPMNNEAIWEKML
KKTFWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKMLGGKSREKIRTYASQLQFGWGDGSDKDMLTEPEQYAQAALT
AVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELG
IFYYEEPVMPLNPAQMKQVADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGGITEVKKICDMAHVYDKTVQI
HVCGGPISTAVALHMETAIPNFVIHELHRYALLEPNTQTCKYNYLPKNGMYEVPELPGIGQELTEETMKKSPTITVK

Sequences:

>Translated_397_residues
MMKITSVDIIDVANDFASATSKWRPVVVKINTDEGISGFGEVGLAYGVGASAGIGMAKDLSAIIIGMDPMNNEAIWEKML
KKTFWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKMLGGKSREKIRTYASQLQFGWGDGSDKDMLTEPEQYAQAALT
AVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELG
IFYYEEPVMPLNPAQMKQVADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGGITEVKKICDMAHVYDKTVQI
HVCGGPISTAVALHMETAIPNFVIHELHRYALLEPNTQTCKYNYLPKNGMYEVPELPGIGQELTEETMKKSPTITVK
>Mature_397_residues
MMKITSVDIIDVANDFASATSKWRPVVVKINTDEGISGFGEVGLAYGVGASAGIGMAKDLSAIIIGMDPMNNEAIWEKML
KKTFWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKMLGGKSREKIRTYASQLQFGWGDGSDKDMLTEPEQYAQAALT
AVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELG
IFYYEEPVMPLNPAQMKQVADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGGITEVKKICDMAHVYDKTVQI
HVCGGPISTAVALHMETAIPNFVIHELHRYALLEPNTQTCKYNYLPKNGMYEVPELPGIGQELTEETMKKSPTITVK

Specific function: Catalyzes the dehydration of D-galactonate to 2-keto-3- deoxy-D-galactonate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. GalD subfamily [H]

Homologues:

Organism=Escherichia coli, GI48994953, Length=326, Percent_Identity=31.5950920245399, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1787864, Length=375, Percent_Identity=28, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI226510960, Length=381, Percent_Identity=23.0971128608924, Blast_Score=85, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018110
- InterPro:   IPR013342
- InterPro:   IPR013341
- InterPro:   IPR001354 [H]

Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]

EC number: =4.2.1.6 [H]

Molecular weight: Translated: 43659; Mature: 43659

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKITSVDIIDVANDFASATSKWRPVVVKINTDEGISGFGEVGLAYGVGASAGIGMAKDL
CCEEEEEEHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHCC
SAIIIGMDPMNNEAIWEKMLKKTFWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKML
EEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEEECCCCCCCHHHHHH
GGKSREKIRTYASQLQFGWGDGSDKDMLTEPEQYAQAALTAVSEGYDAIKVDTVAMDRHG
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCC
NWNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELG
CCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHC
IFYYEEPVMPLNPAQMKQVADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGG
CEEEECCCCCCCHHHHHHHHHHCCCCEECCCEEEEEECCCHHHCCCCEEEECCCCCCCCC
ITEVKKICDMAHVYDKTVQIHVCGGPISTAVALHMETAIPNFVIHELHRYALLEPNTQTC
HHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCCE
KYNYLPKNGMYEVPELPGIGQELTEETMKKSPTITVK
EEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEC
>Mature Secondary Structure
MMKITSVDIIDVANDFASATSKWRPVVVKINTDEGISGFGEVGLAYGVGASAGIGMAKDL
CCEEEEEEHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHCC
SAIIIGMDPMNNEAIWEKMLKKTFWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKML
EEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEEECCCCCCCHHHHHH
GGKSREKIRTYASQLQFGWGDGSDKDMLTEPEQYAQAALTAVSEGYDAIKVDTVAMDRHG
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCC
NWNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELG
CCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHC
IFYYEEPVMPLNPAQMKQVADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGG
CEEEECCCCCCCHHHHHHHHHHCCCCEECCCEEEEEECCCHHHCCCCEEEECCCCCCCCC
ITEVKKICDMAHVYDKTVQIHVCGGPISTAVALHMETAIPNFVIHELHRYALLEPNTQTC
HHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCCE
KYNYLPKNGMYEVPELPGIGQELTEETMKKSPTITVK
EEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA