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The map label for this gene is lpfA

Identifier: 16766926

GI number: 16766926

Start: 3827449

End: 3827985

Strand: Reverse

Name: lpfA

Synonym: STM3640

Alternate gene names: 16766926

Gene position: 3827985-3827449 (Counterclockwise)

Preceding gene: 16766927

Following gene: 16766925

Centisome position: 78.81

GC content: 46.37

Gene sequence:

>537_bases
ATGGAGTTTTTAATGAAAAAGGTTGTTTTTGCTCTGTCTGCTCTCGCTGTAGTTTCCACTTCTGCTTTCGCTGCTGAATC
TGGTGACGGCACCATTAAATTCACCGGTGAAATCGTTGACGCGCCATGCGTCGTTTCTACTGACTCCCAGAACCAGGAAG
TTGTGCTGGGTCAGGTTAAGAAAAATATCTTCAAAGCCATTGGCGACAAGTCTTCTTCTAAGCCTTTCCAGATCAAACTG
GAAGACTGTGACATCACCTCTAATACCAAAGTTAACGTAAGCTTCAATGGCGTTGGTGATACAGACGATGCGACACTGGT
TTCTGTTAACACTGAAGCAGGTGCGGCAACTGGCGTGGGCATCGGTATCTACGACAACGCTAACAAGCTTGTTGAAATGA
ACACCGGTAAATCCACCACTACGTTGGCTGCTGGTCAGACCGTGCTGTACTACACCGCTAACTACGTTGCAACAAAAGAT
ACTGTAACCACTGGTTACGGTAACGCAGAAGTGGACTTCAACCTGTCCTACGAATAA

Upstream 100 bases:

>100_bases
TATATACTAATTATAGTATCCAATACCCACCTCTATACACTCCATTTCCTCACAGAATGCAGATAATCCTAAGGATGCGT
TCTGTTATCTACCGTCATAA

Downstream 100 bases:

>100_bases
TCGAATTTTCGTTAATACAGACAATCATAATGGCAACGGAAATCCCGTTGCCATTTTTTCCAGCGGAGGCTCAGGAAGAG
AATCATGAACCGCTCACGTT

Product: long polar fimbrial protein A precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MEFLMKKVVFALSALAVVSTSAFAAESGDGTIKFTGEIVDAPCVVSTDSQNQEVVLGQVKKNIFKAIGDKSSSKPFQIKL
EDCDITSNTKVNVSFNGVGDTDDATLVSVNTEAGAATGVGIGIYDNANKLVEMNTGKSTTTLAAGQTVLYYTANYVATKD
TVTTGYGNAEVDFNLSYE

Sequences:

>Translated_178_residues
MEFLMKKVVFALSALAVVSTSAFAAESGDGTIKFTGEIVDAPCVVSTDSQNQEVVLGQVKKNIFKAIGDKSSSKPFQIKL
EDCDITSNTKVNVSFNGVGDTDDATLVSVNTEAGAATGVGIGIYDNANKLVEMNTGKSTTTLAAGQTVLYYTANYVATKD
TVTTGYGNAEVDFNLSYE
>Mature_178_residues
MEFLMKKVVFALSALAVVSTSAFAAESGDGTIKFTGEIVDAPCVVSTDSQNQEVVLGQVKKNIFKAIGDKSSSKPFQIKL
EDCDITSNTKVNVSFNGVGDTDDATLVSVNTEAGAATGVGIGIYDNANKLVEMNTGKSTTTLAAGQTVLYYTANYVATKD
TVTTGYGNAEVDFNLSYE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family

Homologues:

Organism=Escherichia coli, GI87082421, Length=181, Percent_Identity=30.939226519337, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI87081753, Length=163, Percent_Identity=38.0368098159509, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787781, Length=161, Percent_Identity=34.1614906832298, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87081805, Length=175, Percent_Identity=29.1428571428571, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1790773, Length=179, Percent_Identity=30.7262569832402, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1789422, Length=184, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790769, Length=155, Percent_Identity=35.4838709677419, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786938, Length=131, Percent_Identity=31.2977099236641, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LPFA_SALTY (P43660)

Other databases:

- EMBL:   U18559
- EMBL:   AE006468
- PIR:   A56271
- RefSeq:   NP_462541.1
- ProteinModelPortal:   P43660
- SMR:   P43660
- GeneID:   1255164
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM3640
- HOGENOM:   HBG701898
- OMA:   DINGQAP
- ProtClustDB:   PRK15209
- BioCyc:   STYP99287:STM3640-MONOMER
- GO:   GO:0009289
- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779
- Gene3D:   G3DSA:2.60.40.1090

Pfam domain/function: PF00419 Fimbrial; SSF49401 Adhes_bact

EC number: NA

Molecular weight: Translated: 18683; Mature: 18683

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLMKKVVFALSALAVVSTSAFAAESGDGTIKFTGEIVDAPCVVSTDSQNQEVVLGQVK
CHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEECCCEEEECCCCCCEEEHHHHH
KNIFKAIGDKSSSKPFQIKLEDCDITSNTKVNVSFNGVGDTDDATLVSVNTEAGAATGVG
HHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCEE
IGIYDNANKLVEMNTGKSTTTLAAGQTVLYYTANYVATKDTVTTGYGNAEVDFNLSYE
EEEEECCCEEEEECCCCCEEEEECCCEEEEEEEEEEEECCEEEECCCCEEEEEEEECC
>Mature Secondary Structure
MEFLMKKVVFALSALAVVSTSAFAAESGDGTIKFTGEIVDAPCVVSTDSQNQEVVLGQVK
CHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEECCCEEEECCCCCCEEEHHHHH
KNIFKAIGDKSSSKPFQIKLEDCDITSNTKVNVSFNGVGDTDDATLVSVNTEAGAATGVG
HHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCEE
IGIYDNANKLVEMNTGKSTTTLAAGQTVLYYTANYVATKDTVTTGYGNAEVDFNLSYE
EEEEECCCEEEEECCCCCEEEEECCCEEEEEEEEEEEECCEEEECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609