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The map label for this gene is lpfE

Identifier: 16766922

GI number: 16766922

Start: 3822485

End: 3823012

Strand: Reverse

Name: lpfE

Synonym: STM3636

Alternate gene names: 16766922

Gene position: 3823012-3822485 (Counterclockwise)

Preceding gene: 16766923

Following gene: 16766921

Centisome position: 78.7

GC content: 51.14

Gene sequence:

>528_bases
ATGAAAAACCTTCATGCTTTGATGCCAGCGTGTTTACTGCTTACCGCTTCCGCGATGGCGGCACCGTCGAATATCGGTTC
TGCTGGTGATATCCACTTTACCATTACTATTAAGGCGGCTACCTGTGAACTGGAAAACGACAGTATCGACGTCAATATGG
AGACCGTGGTGCTTCAGCGCCCGGTAAAAGTGGGTAAAGAGCTGAACCAGAAAAACTTTAGCATCGGCTTAAAAGATTGC
GCGTATGCCACAAAGGCCAGCGTTACGATGGACGGTTCTCCGGACCCGACTGACCCCTCGCTTTTTGCCCTGGATAGCGG
CGGCGCGACGGGCGTGGCGTTAAAAATTAAAACATCTGGTGGGGAGCAACAATACCCCTCCAGTACCGACTCTACGCCTG
TCGAACACACTGTCTGGTTTGATGGTACGAACAAGCTGAACTATATCGCCAGCTATGTGCCTGTTAAGCCGGATGCCACC
GTTGGCACAGCGAATGCGACGGTGAATTTTAGCGTCACATACGAATAA

Upstream 100 bases:

>100_bases
CGACCATTTCGGCTTACCCTATCAGTACCACCGGCAAATTGCCGGCCGCCGGGGATTTCGAGGGAATTGCCACCATGCGT
ATTGATGTGGAGTAAGCAGG

Downstream 100 bases:

>100_bases
TCACTGAGGGCCAGTTCGCTGGCCCTTTTCCATTTTTAGTGATTTTTTGTAAAAATCTTCTCCGATCACACTCTCCGTTG
CCACTTTCCCCTCTGCTTGT

Product: long polar fimbrial minor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MKNLHALMPACLLLTASAMAAPSNIGSAGDIHFTITIKAATCELENDSIDVNMETVVLQRPVKVGKELNQKNFSIGLKDC
AYATKASVTMDGSPDPTDPSLFALDSGGATGVALKIKTSGGEQQYPSSTDSTPVEHTVWFDGTNKLNYIASYVPVKPDAT
VGTANATVNFSVTYE

Sequences:

>Translated_175_residues
MKNLHALMPACLLLTASAMAAPSNIGSAGDIHFTITIKAATCELENDSIDVNMETVVLQRPVKVGKELNQKNFSIGLKDC
AYATKASVTMDGSPDPTDPSLFALDSGGATGVALKIKTSGGEQQYPSSTDSTPVEHTVWFDGTNKLNYIASYVPVKPDAT
VGTANATVNFSVTYE
>Mature_175_residues
MKNLHALMPACLLLTASAMAAPSNIGSAGDIHFTITIKAATCELENDSIDVNMETVVLQRPVKVGKELNQKNFSIGLKDC
AYATKASVTMDGSPDPTDPSLFALDSGGATGVALKIKTSGGEQQYPSSTDSTPVEHTVWFDGTNKLNYIASYVPVKPDAT
VGTANATVNFSVTYE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LPFE_SALTY (P43664)

Other databases:

- EMBL:   U18559
- EMBL:   AE006468
- PIR:   E56271
- RefSeq:   NP_462537.1
- ProteinModelPortal:   P43664
- GeneID:   1255160
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM3636
- NMPDR:   fig|99287.1.peg.3513
- HOGENOM:   HBG701898
- OMA:   ATSGHAN
- ProtClustDB:   PRK15205
- BioCyc:   STYP99287:STM3636-MONOMER
- GO:   GO:0009289
- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779
- Gene3D:   G3DSA:2.60.40.1090

Pfam domain/function: PF00419 Fimbrial; SSF49401 Adhes_bact

EC number: NA

Molecular weight: Translated: 18419; Mature: 18419

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLHALMPACLLLTASAMAAPSNIGSAGDIHFTITIKAATCELENDSIDVNMETVVLQR
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEC
PVKVGKELNQKNFSIGLKDCAYATKASVTMDGSPDPTDPSLFALDSGGATGVALKIKTSG
CHHHHHHCCCCCCEEECHHHCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEEEEEEECC
GEQQYPSSTDSTPVEHTVWFDGTNKLNYIASYVPVKPDATVGTANATVNFSVTYE
CCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEECCCEEEEEEEEEC
>Mature Secondary Structure
MKNLHALMPACLLLTASAMAAPSNIGSAGDIHFTITIKAATCELENDSIDVNMETVVLQR
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEC
PVKVGKELNQKNFSIGLKDCAYATKASVTMDGSPDPTDPSLFALDSGGATGVALKIKTSG
CHHHHHHCCCCCCEEECHHHCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEEEEEEECC
GEQQYPSSTDSTPVEHTVWFDGTNKLNYIASYVPVKPDATVGTANATVNFSVTYE
CCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEECCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609