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The map label for this gene is ugpB [H]

Identifier: 16766843

GI number: 16766843

Start: 3726361

End: 3727677

Strand: Reverse

Name: ugpB [H]

Synonym: STM3557

Alternate gene names: 16766843

Gene position: 3727677-3726361 (Counterclockwise)

Preceding gene: 16766844

Following gene: 16766842

Centisome position: 76.74

GC content: 52.85

Gene sequence:

>1317_bases
ATGATATCGTTACGACATACAGCTTTAGGACTGGCGCTGAGTCTGGCATTTACGGGTCAGGCGTTGGCCGTCACCACTAT
TCCATTCTGGCATTCAATGGAAGGGGAGTTAGGCAAAGAAGTTGATTCACTGGCGCAACGTTTCAACCAGGCCAATCCGG
ATTACAAAATCGTTCCGGTCTATAAGGGGAACTATGAACAGAACCTGAGCGCCGGGATCGCGGCATTCCGTACCGGCAAC
GCGCCGGCAATATTGCAGGTTTATGAGGTTGGGACGGCGACCATGATGGCCTCGAAAGCCATTAAGCCGGTTTATGAAGT
GTTTAAAGACGCCGGTATTAACTTTGACGAGTCCCAGTTTGTACCGACCGTTGCAGGCTACTACACCGATGCTAAAAGCG
GGCATCTGCTCTCCCAGCCCTTTAACAGCTCCACGCCGGTACTGTACTACAACAAAGACGCCTTTAAGAAAGCCGGTTTA
GATCCGGAGCAGCCGCCGAAAACCTGGCAGGAGCTGGCTGACTATACCGCGAAATTGAGAGCGGCAGGCATGAAATGCGG
TTACGCCAGCGGCTGGCAAGGCTGGATCCAACTGGAAAACTTCAGCGCCTGGAACGGTCTCCCCTTCGCCAGTAAAAACA
ATGGCTTTGACGGTACAGATGCGGTGCTGGAGTTTAATAAGCCAGAGCAGGTGAAACATATCGCGCTGCTGGAAGAGATG
AATAAGAAAGGCGATTTTAGCTATGTTGGGCGTAAGGACGAGTCTACCGAGAAGTTTTATAACGGTGACTGCGCGATGAC
AACCGCGTCCTCCGGCTCGCTCGCCAATATCCGCCAGTATGCCAAATTTAACTATGGCGTGGGTATGATGCCGTACGACG
CTGATATCAAGGGCGCGCCGCAAAACGCCATTATCGGCGGAGCCAGCCTATGGGTCATGCAGGGTAAAGATAAAGAAACC
TATACCGGCGTCGCCAAATTCCTCGACTTCCTGGCAAAACCGGAAAACGCTGCTGAATGGCATCAAAAAACCGGCTACCT
GCCGATTACCACCGCCGCCTACGAGCTGACCCGCGAGCAGGGTTATTACGATAAAAACCCCGGTGCGGATATCGCCACTC
GCCAGATGTTGAATAAGCCGCCGTTACCCTTCACCAAAGGCTTGCGTCTGGGCAATATGCCGCAGATTCGTACCATCGTG
GACGAAGAGCTGGAAAGCGTCTGGACCGGGAAGAAAACCCCACAACAGGCGTTGGATACCGCAGTGGATCGCGGGAATCA
GTTGCTGCGTCGTTTTGAGAAAGCGAGCAAATCTTAA

Upstream 100 bases:

>100_bases
ATAAAAAAGTTATTTTTCTGTCATTCGAGCATGTCATGTTACCCCCGCGAACATAAAACGCGTGATATCGCGCATCCCGG
CACAAAAAGAGAGATAACCG

Downstream 100 bases:

>100_bases
GTGTATAAGTGCCGGATAAGGTGCATGCACCGCCATCCGGCACCTTCCAGGAAAAGAACCTTCATGTCATCATCCCGTCC
GGTGTTCCGCTCGCGCTGGC

Product: glycerol-3-phosphate transporter periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MISLRHTALGLALSLAFTGQALAVTTIPFWHSMEGELGKEVDSLAQRFNQANPDYKIVPVYKGNYEQNLSAGIAAFRTGN
APAILQVYEVGTATMMASKAIKPVYEVFKDAGINFDESQFVPTVAGYYTDAKSGHLLSQPFNSSTPVLYYNKDAFKKAGL
DPEQPPKTWQELADYTAKLRAAGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIALLEEM
NKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIRQYAKFNYGVGMMPYDADIKGAPQNAIIGGASLWVMQGKDKET
YTGVAKFLDFLAKPENAAEWHQKTGYLPITTAAYELTREQGYYDKNPGADIATRQMLNKPPLPFTKGLRLGNMPQIRTIV
DEELESVWTGKKTPQQALDTAVDRGNQLLRRFEKASKS

Sequences:

>Translated_438_residues
MISLRHTALGLALSLAFTGQALAVTTIPFWHSMEGELGKEVDSLAQRFNQANPDYKIVPVYKGNYEQNLSAGIAAFRTGN
APAILQVYEVGTATMMASKAIKPVYEVFKDAGINFDESQFVPTVAGYYTDAKSGHLLSQPFNSSTPVLYYNKDAFKKAGL
DPEQPPKTWQELADYTAKLRAAGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIALLEEM
NKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIRQYAKFNYGVGMMPYDADIKGAPQNAIIGGASLWVMQGKDKET
YTGVAKFLDFLAKPENAAEWHQKTGYLPITTAAYELTREQGYYDKNPGADIATRQMLNKPPLPFTKGLRLGNMPQIRTIV
DEELESVWTGKKTPQQALDTAVDRGNQLLRRFEKASKS
>Mature_438_residues
MISLRHTALGLALSLAFTGQALAVTTIPFWHSMEGELGKEVDSLAQRFNQANPDYKIVPVYKGNYEQNLSAGIAAFRTGN
APAILQVYEVGTATMMASKAIKPVYEVFKDAGINFDESQFVPTVAGYYTDAKSGHLLSQPFNSSTPVLYYNKDAFKKAGL
DPEQPPKTWQELADYTAKLRAAGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIALLEEM
NKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIRQYAKFNYGVGMMPYDADIKGAPQNAIIGGASLWVMQGKDKET
YTGVAKFLDFLAKPENAAEWHQKTGYLPITTAAYELTREQGYYDKNPGADIATRQMLNKPPLPFTKGLRLGNMPQIRTIV
DEELESVWTGKKTPQQALDTAVDRGNQLLRRFEKASKS

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=438, Percent_Identity=91.324200913242, Blast_Score=828, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48393; Mature: 48393

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISLRHTALGLALSLAFTGQALAVTTIPFWHSMEGELGKEVDSLAQRFNQANPDYKIVPV
CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
YKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYEVFKDAGINFDESQF
ECCCCHHHHHHHHHHEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
VPTVAGYYTDAKSGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQELADYTAKLR
CCHHHHHCCCCCCCCEECCCCCCCCCEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHH
AAGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIALLEEM
HHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHH
NKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIRQYAKFNYGVGMMPYDADIKGAP
CCCCCEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
QNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLPITTAAYELTREQ
CCCEECCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEHHHHHHHHHC
GYYDKNPGADIATRQMLNKPPLPFTKGLRLGNMPQIRTIVDEELESVWTGKKTPQQALDT
CCCCCCCCCCHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
AVDRGNQLLRRFEKASKS
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MISLRHTALGLALSLAFTGQALAVTTIPFWHSMEGELGKEVDSLAQRFNQANPDYKIVPV
CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
YKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYEVFKDAGINFDESQF
ECCCCHHHHHHHHHHEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
VPTVAGYYTDAKSGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQELADYTAKLR
CCHHHHHCCCCCCCCEECCCCCCCCCEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHH
AAGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIALLEEM
HHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHH
NKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIRQYAKFNYGVGMMPYDADIKGAP
CCCCCEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
QNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLPITTAAYELTREQ
CCCEECCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEHHHHHHHHHC
GYYDKNPGADIATRQMLNKPPLPFTKGLRLGNMPQIRTIVDEELESVWTGKKTPQQALDT
CCCCCCCCCCHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
AVDRGNQLLRRFEKASKS
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]